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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00212
Bact-Virpig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00212
Identity
- Kingdom:
- phage
Quality
61.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-75_107-162
D2
medium
residues 177-283_375-446
Domain cluster:
rep: MW584157.1__QSM02054.1__PROPHIGD68-1_78__00076__D7-250
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 32.3 | 1.50e-07 | 57.5% | 59.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k36B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 64.0 | 4.97e-01 | 98.3% | 92.9% |
| 5v1qB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 58.0 | 4.87e-01 | 88.8% | 100.0% |
| 1r30A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 51.0 | 4.25e-01 | 97.2% | 88.1% |
| 1tvlA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.56 | 47.0 | 3.64e-01 | 89.9% | 94.1% |
| 1zunA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 39.0 | 3.88e-01 | 72.1% | 80.7% |
| 3lm3A01 | 3.20.20.510 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Uncharacterised protein PF12979, DUF3863 | 0.55 | 48.0 | 4.04e-01 | 96.1% | 97.7% |
| 1qo2A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 43.0 | 3.93e-01 | 87.7% | 99.6% |
| 1f75A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.52 | 44.0 | 4.13e-01 | 89.4% | 96.3% |
| 2p0oA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 42.0 | 3.90e-01 | 87.2% | 98.7% |
| 6zxbA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 32.0 | 3.70e-01 | 93.9% | 84.6% |
| 3rssA01 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.51 | 36.0 | 3.43e-01 | 70.4% | 92.4% |
| 1geqB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 45.0 | 4.09e-01 | 98.3% | 98.4% |
| 1t70A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.50 | 40.0 | 3.58e-01 | 84.4% | 100.0% |
| 7txuA02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.50 | 36.0 | 4.02e-01 | 96.6% | 96.4% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995751 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 69.0 | 5.58e-01 | 99.4% | 96.2% |
| 5031546 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 65.0 | 5.31e-01 | 93.3% | 91.8% |
| 4118176 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.72 | 64.0 | 5.12e-01 | 93.3% | 95.5% |
| 4958342 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 66.0 | 5.12e-01 | 97.2% | 93.2% |
| 5054137 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 65.0 | 4.98e-01 | 96.6% | 91.3% |
| 5002836 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 64.0 | 4.91e-01 | 93.9% | 87.2% |
| 4240570 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.72 | 63.0 | 4.88e-01 | 92.7% | 88.4% |
| 5011835 | 2002.1.1.446 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF3463 | 0.71 | 66.0 | 5.32e-01 | 97.8% | 92.6% |
| 4955890 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 65.0 | 5.18e-01 | 96.6% | 97.6% |
| 5056464 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 64.0 | 5.03e-01 | 95.0% | 91.0% |
| 5057587 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 66.0 | 5.29e-01 | 98.9% | 92.5% |
| 5010430 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 66.0 | 5.34e-01 | 98.9% | 91.6% |
| 5056789 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 66.0 | 5.37e-01 | 98.3% | 99.0% |
| 5032526 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 65.0 | 5.26e-01 | 98.3% | 93.9% |
| 4939989 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 66.0 | 5.24e-01 | 100.0% | 96.8% |
| 4968541 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 65.0 | 5.28e-01 | 97.8% | 89.5% |
| 5021137 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 63.0 | 4.77e-01 | 94.4% | 86.7% |
| 4967590 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 63.0 | 4.90e-01 | 95.0% | 92.5% |
| 4280202 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 53.0 | 4.63e-01 | 77.7% | 100.0% |
| 5005019 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 62.0 | 4.77e-01 | 94.4% | 85.7% |
| 4987866 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.69 | 65.0 | 5.14e-01 | 99.4% | 99.4% |
| 4981908 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.69 | 64.0 | 4.99e-01 | 98.9% | 95.3% |
| 4942944 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.68 | 64.0 | 5.03e-01 | 99.4% | 98.0% |
| 998620 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.68 | 63.0 | 4.88e-01 | 99.4% | 89.5% |
| 2439603 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.68 | 48.0 | 4.39e-01 | 72.1% | 100.0% |
| 4997245 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.68 | 64.0 | 4.82e-01 | 100.0% | 92.8% |
| 4995750 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.68 | 62.0 | 5.09e-01 | 97.2% | 98.7% |
| 4946639 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.68 | 62.0 | 4.85e-01 | 96.6% | 89.3% |
| 4955076 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 61.0 | 5.00e-01 | 97.2% | 96.2% |
| 4944768 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 63.0 | 5.05e-01 | 100.0% | 94.9% |
| 3969428 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.67 | 63.0 | 4.95e-01 | 99.4% | 94.6% |
| 4416801 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 63.0 | 4.87e-01 | 99.4% | 89.7% |
| 4099491 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.67 | 62.0 | 4.83e-01 | 99.4% | 88.0% |
| 2323965 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.66 | 62.0 | 4.92e-01 | 99.4% | 93.2% |
| 5055755 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.64 | 56.0 | 4.47e-01 | 92.2% | 90.0% |
| 4943916 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.64 | 54.0 | 4.70e-01 | 88.8% | 95.5% |
| 3630518 | 2496.1.1.6 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO_2 | 0.58 | 45.0 | 4.69e-01 | 85.5% | 85.9% |
| 5035421 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.57 | 53.0 | 4.52e-01 | 98.9% | 100.0% |
| None | — | 0.54 | 45.0 | 4.08e-01 | 89.4% | 97.6% | |
| 3388919 | 2002.1.1.185 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_99 | 0.52 | 44.0 | 3.49e-01 | 89.4% | 91.1% |
| 3273502 | 2486.1.1.5 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 | 0.52 | 41.0 | 2.93e-01 | 83.8% | 45.8% |
| 3643243 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.51 | 46.0 | 4.01e-01 | 98.9% | 90.0% |
| 4153642 | 2002.1.1.43 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth | 0.51 | 43.0 | 3.95e-01 | 89.4% | 100.0% |
| 5057708 | 7516.1.1.24 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 | 0.51 | 41.0 | 4.03e-01 | 95.0% | 77.4% |
| 3602940 | 2486.1.1.14 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 | 0.51 | 36.0 | 3.26e-01 | 71.5% | 98.3% |
| 5041103 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 33.0 | 3.95e-01 | 97.2% | 97.5% |
D3
medium
residues 284-374