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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00252
Bact-Virpig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00252
Identity
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-93_116-165
Domain cluster:
rep: IMGVR_UViG_3300021285_000027-3300021285-Ga0214509_10005073__D218-420
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 29.0 | 3.64e-01 | 91.6% | 81.7% |
| 2jz7A00 | 3.30.1660.30 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Selenium-binding protein | 0.54 | 23.0 | 2.87e-01 | 97.2% | 60.5% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 26.0 | 3.77e-01 | 92.3% | 100.0% |
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 28.0 | 3.44e-01 | 95.1% | 82.9% |
| 3e3rA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 30.0 | 3.50e-01 | 100.0% | 83.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967616 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 66.0 | 6.07e-01 | 100.0% | 76.7% |
| 3518904 | 101.1.2.556 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26288 | 0.55 | 26.0 | 3.29e-01 | 84.6% | 74.1% |
| 3237573 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 26.0 | 3.64e-01 | 98.6% | 98.5% |
| 4978851 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.54 | 24.0 | 3.22e-01 | 78.3% | 77.3% |
| 3434805 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.54 | 34.0 | 3.81e-01 | 95.8% | 83.8% |
| 3260395 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.53 | 31.0 | 3.81e-01 | 99.3% | 96.5% |
| 5063572 | 328.3.1.0 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain | 0.53 | 22.0 | 2.91e-01 | 97.2% | 70.0% |
| 3407104 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 29.0 | 3.60e-01 | 96.5% | 89.4% |
| 3595462 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 26.0 | 3.48e-01 | 99.3% | 95.7% |
| 3930044 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 28.0 | 3.49e-01 | 88.1% | 90.0% |
| 3442602 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 30.0 | 3.48e-01 | 95.8% | 81.0% |
| 3422463 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 33.0 | 3.66e-01 | 95.8% | 85.7% |
| 3296790 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 30.0 | 3.38e-01 | 92.3% | 76.2% |
D2
medium
residues 94-115_166-206
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.66e-01 | 85.7% | 92.0% |
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 3.97e-01 | 92.1% | 68.6% |
| 5deqB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 3.96e-01 | 85.7% | 75.9% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 40.0 | 3.89e-01 | 96.8% | 69.3% |
| 4v19R01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.52 | 38.0 | 3.26e-01 | 81.0% | 80.4% |
| 4czwA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 41.0 | 2.60e-01 | 92.1% | 84.9% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 40.0 | 3.76e-01 | 93.7% | 75.3% |
| 1ykdB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 40.0 | 2.96e-01 | 93.7% | 54.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3784212 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 4.02e-01 | 90.5% | 66.7% |
| 5030563 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.56 | 42.0 | 3.74e-01 | 82.5% | 57.9% |
| 5022759 | 304.51.1.6 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 | 0.55 | 41.0 | 3.76e-01 | 100.0% | 57.9% |
| 4139793 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.54 | 40.0 | 3.30e-01 | 84.1% | 68.5% |
| 3389576 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 40.0 | 2.83e-01 | 90.5% | 25.2% |
| 3953672 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.52 | 42.0 | 3.36e-01 | 98.4% | 76.1% |
| 3549847 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.52 | 39.0 | 2.52e-01 | 85.7% | 18.4% |
| 3668465 | 304.120.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › MBTP1_N | 0.52 | 41.0 | 3.86e-01 | 90.5% | 76.2% |
| 3962216 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 41.0 | 3.33e-01 | 93.7% | 82.9% |
| 4851980 | 3398.1.1.2 ↗ | a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › prok_STING | 0.52 | 37.0 | 2.79e-01 | 81.0% | 30.2% |
| 1297469 | 11.1.4.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa2 | 0.52 | 42.0 | 3.33e-01 | 98.4% | 75.6% |
| None | — | 0.52 | 41.0 | 2.59e-01 | 92.1% | 16.1% | |
| 3298365 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 40.0 | 3.64e-01 | 95.2% | 65.0% |
| 3959660 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 42.0 | 3.40e-01 | 98.4% | 83.2% |
| 5031087 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.51 | 42.0 | 4.01e-01 | 96.8% | 92.3% |
| 3406890 | 304.120.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › MBTP1_N | 0.51 | 40.0 | 3.64e-01 | 90.5% | 71.1% |
| 5043596 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.50 | 40.0 | 3.48e-01 | 96.8% | 88.7% |