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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00305
Bact-Virpig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00305
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-165
Domain cluster:
rep: PH2015_18_scaffold_2_prodigal-single.1__X__X__00357__D3-170
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23780.2 best | S-AdoMet_lyase | 52.4 | 7.60e-14 | 90.4% | 75.2% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cqmA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.64 | 40.0 | 4.95e-01 | 91.0% | 100.0% |
| 2j5aA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.64 | 41.0 | 4.92e-01 | 85.3% | 95.3% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 39.0 | 4.79e-01 | 75.6% | 100.0% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 40.0 | 4.81e-01 | 76.3% | 100.0% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 40.0 | 4.76e-01 | 77.6% | 98.1% |
| 1z87A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 30.0 | 3.58e-01 | 92.9% | 75.0% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 23.0 | 3.42e-01 | 93.6% | 84.1% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.56 | 39.0 | 3.34e-01 | 70.5% | 92.8% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 38.0 | 3.17e-01 | 70.5% | 71.6% |
| 4l3tA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 45.0 | 3.83e-01 | 88.5% | 95.1% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 4.20e-01 | 75.0% | 100.0% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 24.0 | 3.04e-01 | 71.2% | 67.7% |
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.53 | 43.0 | 4.24e-01 | 88.5% | 79.5% |
| 1nz8A00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.53 | 38.0 | 4.26e-01 | 91.7% | 100.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3840041 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.76 | 69.0 | 6.17e-01 | 96.2% | 84.8% |
| 4226954 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.68 | 41.0 | 5.15e-01 | 76.9% | 98.9% |
| 4353875 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.66 | 42.0 | 4.65e-01 | 77.6% | 80.0% |
| 5123 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.64 | 41.0 | 4.92e-01 | 85.3% | 95.3% |
| 3312666 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 24.0 | 3.51e-01 | 75.6% | 74.3% |
| 4350044 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.63 | 40.0 | 4.78e-01 | 77.6% | 97.0% |
| 4554484 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.63 | 44.0 | 4.59e-01 | 82.7% | 76.6% |
| 3839311 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.62 | 43.0 | 5.03e-01 | 94.2% | 100.0% |
| 4109316 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.62 | 44.0 | 5.00e-01 | 90.4% | 98.2% |
| 4258266 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.62 | 44.0 | 5.00e-01 | 90.4% | 98.3% |
| 1312370 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.62 | 43.0 | 4.90e-01 | 94.2% | 97.4% |
| 4088643 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.60 | 38.0 | 4.54e-01 | 74.4% | 95.2% |
| 3273461 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.60 | 45.0 | 4.50e-01 | 98.7% | 76.2% |
| 4436655 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.59 | 41.0 | 4.46e-01 | 89.7% | 87.2% |
| 3316326 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.58 | 44.0 | 3.63e-01 | 79.5% | 53.2% |
| None | — | 0.57 | 49.0 | 4.85e-01 | 92.3% | 95.2% | |
| 4062697 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.56 | 41.0 | 4.19e-01 | 89.7% | 78.0% |
| 5027463 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.56 | 48.0 | 4.76e-01 | 92.9% | 93.9% |
| 332301 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.55 | 37.0 | 4.32e-01 | 89.1% | 98.1% |
| 4377632 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.55 | 45.0 | 4.80e-01 | 89.1% | 100.0% |
| 5035531 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.55 | 46.0 | 4.62e-01 | 90.4% | 100.0% |
| 4527096 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.55 | 47.0 | 4.60e-01 | 92.3% | 100.0% |
| 3952844 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 41.0 | 4.42e-01 | 84.6% | 93.8% |
| 5059543 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.54 | 47.0 | 4.45e-01 | 95.5% | 96.8% |
| 3492278 | 304.116.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF | 0.53 | 39.0 | 4.28e-01 | 75.6% | 94.6% |
| 3930069 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 43.0 | 2.82e-01 | 87.8% | 36.7% |
| 3819055 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 37.0 | 3.52e-01 | 79.5% | 61.1% |
| 4514714 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.53 | 45.0 | 4.46e-01 | 94.2% | 99.4% |
| 5004080 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.52 | 42.0 | 4.43e-01 | 92.3% | 94.3% |
| 4960211 | 220.5.1.1 ↗ | beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N | 0.51 | 28.0 | 3.44e-01 | 100.0% | 84.2% |
| 4953513 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.51 | 45.0 | 4.57e-01 | 99.4% | 98.0% |
| 3449596 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 35.0 | 3.43e-01 | 79.5% | 64.1% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.50 | 44.0 | 3.45e-01 | 98.1% | 72.7% |
| 3700802 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.50 | 43.0 | 4.45e-01 | 94.2% | 100.0% |