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pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00027
Bact-Virpig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00027
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-126_161-175_330-362
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00883__D106-222
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4akrA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.58 | 34.0 | 4.05e-01 | 75.9% | 86.8% |
| 5ez1A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.54 | 29.0 | 3.63e-01 | 83.3% | 84.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954554 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.64 | 40.0 | 4.85e-01 | 90.1% | 97.1% |
| 3168819 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.55 | 22.0 | 3.04e-01 | 96.9% | 71.6% |
| 1836662 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.54 | 29.0 | 3.58e-01 | 83.3% | 80.0% |
| 3667166 | 304.20.1.2 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 | 0.50 | 26.0 | 2.67e-01 | 84.0% | 45.5% |
D2
medium
residues 185-325
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 21.0 | 3.18e-01 | 95.7% | 95.7% |
| 2p3yA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 13.0 | 2.57e-01 | 75.9% | 83.3% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 23.0 | 3.24e-01 | 95.7% | 89.8% |
| 7q37A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 35.0 | 3.11e-01 | 73.0% | 91.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3502362 | 601.54.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 › MTABC_N | 0.59 | 38.0 | 3.45e-01 | 76.6% | 47.6% |
| 3681469 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 42.0 | 3.39e-01 | 79.4% | 46.5% |
| 3250231 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.54 | 37.0 | 3.25e-01 | 70.2% | 65.6% |
| 4026684 | 192.20.1.7 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 | 0.53 | 31.0 | 3.54e-01 | 73.8% | 76.2% |
| 4965814 | 5076.2.1.13 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 | 0.53 | 47.0 | 3.88e-01 | 97.2% | 74.1% |
| 5056304 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.52 | 31.0 | 3.56e-01 | 85.1% | 78.1% |
| 3839042 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 17.0 | 2.87e-01 | 94.3% | 86.7% |
| 3410238 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.52 | 39.0 | 2.64e-01 | 78.7% | 83.2% |
| 3288433 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.52 | 38.0 | 3.52e-01 | 75.2% | 85.7% |