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pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00118
Bact-Virpig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00118
Identity
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-213
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02919.21 best | Topoisom_I_N | 79.4 | 4.10e-22 | 97.5% | 91.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073641 | 4039.1.1.1 ↗ | beta complex topology › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Topoisom_I_N | 0.88 | 50.0 | 6.48e-01 | 100.0% | 93.6% |
| 3599064 | 4039.1.1.0 ↗ | beta complex topology › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 0.86 | 49.0 | 5.96e-01 | 100.0% | 82.9% |
D2
high
residues 225-302
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01028.26 best | Topoisom_I | 52.9 | 4.60e-14 | 100.0% | 32.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a31A03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.87 | 81.0 | 6.38e-01 | 100.0% | 52.0% |
| 3mzlB02 | 6.10.140.1600 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 38.0 | 4.27e-01 | 80.8% | 87.5% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.53 | 36.0 | 3.03e-01 | 70.5% | 92.3% |
| 6gc1A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 46.0 | 3.49e-01 | 97.4% | 62.8% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 35.0 | 2.89e-01 | 70.5% | 35.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044666 | 101.1.8.2 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I | 0.93 | 84.0 | 6.42e-01 | 97.4% | 46.3% |
| 3599060 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.88 | 80.0 | 5.80e-01 | 100.0% | 38.5% |
| 3626645 | 193.1.1.28 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › RLL | 0.68 | 37.0 | 3.46e-01 | 73.1% | 43.2% |
| 4171508 | 109.4.1.117 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG,SCD | 0.57 | 50.0 | 3.11e-01 | 93.6% | 64.1% |
| 3275866 | 109.4.1.310 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HDS,Sec7-like_HUS,DCB,BIG2_C | 0.54 | 49.0 | 2.69e-01 | 98.7% | 19.7% |
| 3331894 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.52 | 46.0 | 2.94e-01 | 98.7% | 46.6% |
| 4393704 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 39.0 | 2.49e-01 | 87.2% | 28.2% |
| 3594357 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.50 | 41.0 | 3.15e-01 | 96.2% | 84.8% |