←Back to structures

pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00149

Bact-Vir

pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00149

Identity

Kingdom:
phage

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-29_44-72
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 59.0 5.85e-01 100.0% 73.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 59.0 5.84e-01 98.2% 75.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 5.53e-01 100.0% 69.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.73 60.0 5.88e-01 100.0% 83.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.91e-01 87.7% 46.8%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 45.0 2.92e-01 91.2% 81.3%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.57 39.0 2.50e-01 70.2% 23.2%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 39.0 2.89e-01 73.7% 44.7%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 42.0 3.93e-01 100.0% 72.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.71e-01 100.0% 73.4%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.52e-01 82.5% 61.0%
1xy7B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 39.0 3.18e-01 87.7% 82.8%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.55e-01 84.2% 64.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.51 39.0 4.02e-01 86.0% 89.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.95e-01 100.0% 83.1%
7ly5B01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 36.0 2.69e-01 70.2% 76.5%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 43.0 3.67e-01 100.0% 100.0%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 43.0 3.17e-01 100.0% 36.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.74 65.0 5.49e-01 100.0% 60.0%
3731092 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.71 62.0 4.48e-01 98.2% 69.4%
3581696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.60e-01 100.0% 92.0%
4942163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.48e-01 100.0% 78.5%
3835809 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.59 39.0 4.35e-01 84.2% 97.5%
4943539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.53e-01 86.0% 97.7%
3386501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 4.16e-01 89.5% 74.7%
3511246 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.57 50.0 3.63e-01 100.0% 43.0%
4902610 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.57 38.0 2.77e-01 71.9% 58.1%
4959077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.75e-01 100.0% 98.4%
3720866 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 3.78e-01 86.0% 64.6%
3811724 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.55 37.0 3.68e-01 70.2% 67.2%
3522979 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 37.0 4.01e-01 86.0% 88.9%
3781427 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 45.0 3.50e-01 93.0% 77.6%
4952430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 45.0 3.73e-01 100.0% 56.4%
3512937 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 43.0 3.34e-01 96.5% 86.7%
3918073 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 39.0 3.79e-01 91.2% 70.0%
3505220 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 41.0 3.15e-01 89.5% 60.4%
3594576 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.61e-01 100.0% 74.5%
3204334 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.51 39.0 4.01e-01 96.5% 100.0%
4661764 601.52.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.51 40.0 2.56e-01 94.7% 14.5%
3923860 11.1.1.1086 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28829 0.51 40.0 3.09e-01 100.0% 38.5%