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pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00251

Bact-Vir

pig_ID_2419_F67_scaffold_44_curated_prodigal-single.1__X__X__00251

Identity

Kingdom:
phage

Quality

89.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-86
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 50.0 4.55e-01 75.6% 50.5%
5fmgA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.72 46.0 3.32e-01 78.2% 23.3%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 46.0 3.86e-01 88.5% 41.9%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 41.0 3.62e-01 78.2% 42.1%
1woqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 48.0 4.31e-01 78.2% 57.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.65 48.0 3.88e-01 78.2% 70.8%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 53.0 4.94e-01 94.9% 96.0%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 56.0 3.69e-01 100.0% 28.0%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 51.0 4.96e-01 89.7% 91.9%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 3.83e-01 98.7% 36.1%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.62 45.0 3.55e-01 78.2% 40.1%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.62 43.0 3.61e-01 71.8% 57.8%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.62 38.0 3.23e-01 71.8% 36.4%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 54.0 3.57e-01 100.0% 27.1%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 54.0 3.50e-01 100.0% 24.1%
4dolA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.60 42.0 3.34e-01 73.1% 59.6%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 50.0 4.34e-01 93.6% 76.4%
3i2nA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 54.0 3.48e-01 100.0% 25.5%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 40.0 3.29e-01 70.5% 67.9%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.33e-01 100.0% 26.9%
2r9yA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 40.0 3.25e-01 71.8% 63.0%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 47.0 4.19e-01 93.6% 79.3%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 49.0 4.45e-01 97.4% 79.1%
2v95A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 39.0 3.28e-01 70.5% 65.9%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.92e-01 83.3% 78.4%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.31e-01 78.2% 88.4%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 4.01e-01 96.2% 86.0%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.54 46.0 4.61e-01 94.9% 97.5%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 3.51e-01 91.0% 95.6%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.53 34.0 3.08e-01 97.4% 45.9%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 43.0 3.35e-01 91.0% 100.0%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 34.0 3.36e-01 71.8% 62.7%
2mouA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.28e-01 97.4% 81.8%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 42.0 3.48e-01 85.9% 93.2%
3weoA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 46.0 3.21e-01 100.0% 47.5%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.30e-01 83.3% 80.8%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.52 38.0 3.03e-01 78.2% 76.2%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.52 33.0 3.05e-01 98.7% 45.0%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.40e-01 88.5% 95.1%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.51 38.0 2.80e-01 80.8% 60.9%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.51 38.0 3.22e-01 82.1% 70.7%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.50 40.0 3.01e-01 87.2% 68.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014272 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.72 51.0 5.37e-01 73.1% 90.0%
4380331 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.68 45.0 4.77e-01 78.2% 77.1%
4626996 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.67 50.0 3.72e-01 78.2% 45.9%
4054729 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.67 53.0 5.41e-01 85.9% 100.0%
4345567 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 47.0 3.92e-01 73.1% 43.7%
4257113 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.66 45.0 4.75e-01 78.2% 78.6%
3286384 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 51.0 4.44e-01 93.6% 52.8%
3937047 9.1.1.55 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 0.64 50.0 4.33e-01 83.3% 89.2%
3658748 4099.1.1.14 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Knl1_RWD_C 0.64 53.0 4.87e-01 91.0% 82.0%
3505083 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 51.0 3.34e-01 89.7% 25.9%
3170091 243.1.1.116 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29059 0.62 45.0 3.97e-01 97.4% 53.6%
5021930 4312.1.1.22 a+b two layers › RelE-like › RelE-like › RelE-like › PF27370 0.62 40.0 3.66e-01 73.1% 51.0%
3545608 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.62 55.0 3.54e-01 100.0% 21.9%
5078228 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.61 44.0 3.48e-01 74.4% 50.0%
4175367 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 50.0 4.84e-01 91.0% 90.0%
3283785 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.60 51.0 4.90e-01 94.9% 100.0%
3220909 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.60 51.0 4.44e-01 93.6% 91.7%
2103527 11.1.1.344 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_56 0.60 53.0 4.98e-01 96.2% 91.4%
3765357 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.60 54.0 3.40e-01 100.0% 20.7%
4887836 5.1.7.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR_6, Sortilin-Vps10 0.60 53.0 3.27e-01 100.0% 22.5%
3784575 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 53.0 3.37e-01 100.0% 20.7%
3268995 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.60 53.0 3.33e-01 100.0% 20.5%
3248970 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.59 52.0 4.68e-01 100.0% 95.5%
3240229 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 45.0 3.12e-01 87.2% 23.3%
4974435 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 46.0 4.28e-01 82.1% 70.5%
3396994 5.1.4.382 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1899, ANAPC4_WD40, WD40_4 0.59 53.0 3.34e-01 100.0% 20.2%
3998243 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 52.0 3.44e-01 100.0% 24.4%
3215376 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.59 52.0 3.30e-01 100.0% 20.5%
3894385 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 49.0 3.29e-01 100.0% 23.2%
4638787 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 48.0 4.78e-01 92.3% 95.0%
4025506 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.58 52.0 3.33e-01 100.0% 21.8%
3928054 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 51.0 3.58e-01 100.0% 33.2%
3397105 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.58 50.0 3.44e-01 100.0% 86.7%
None 0.58 52.0 3.31e-01 100.0% 23.1%
3490231 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.58 51.0 3.33e-01 100.0% 57.7%
3215469 5.1.4.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1899,WD40_4 0.58 52.0 3.31e-01 100.0% 21.3%
3382274 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.58 52.0 2.96e-01 100.0% 10.7%
3508969 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 51.0 3.58e-01 100.0% 37.6%
3948814 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.58 42.0 3.90e-01 96.2% 59.0%
3437699 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 47.0 3.34e-01 100.0% 29.2%
3312418 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 51.0 3.47e-01 100.0% 27.3%
3607492 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.57 50.0 3.19e-01 100.0% 20.7%
3813621 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 48.0 4.51e-01 93.6% 85.3%
5025183 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 43.0 4.26e-01 83.3% 91.8%
3599903 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.19e-01 100.0% 21.0%
3263883 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.56 50.0 3.09e-01 100.0% 20.7%
3595178 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 50.0 2.93e-01 100.0% 11.6%
3627094 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.28e-01 100.0% 24.1%
3617123 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.56 48.0 2.97e-01 98.7% 15.7%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 45.0 4.07e-01 92.3% 77.3%
3330702 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.21e-01 100.0% 30.2%
5022918 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 3.96e-01 96.2% 93.3%
3582576 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.55 48.0 3.23e-01 100.0% 36.4%
4325844 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.55 43.0 2.63e-01 82.1% 68.0%
3457412 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 48.0 3.36e-01 100.0% 33.7%
4029617 5.1.11.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.55 48.0 2.99e-01 98.7% 30.4%
3781917 5.1.4.332 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.55 48.0 3.26e-01 100.0% 25.5%
2885136 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.55 47.0 2.92e-01 100.0% 20.6%
3178847 12.3.1.36 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF5127 0.55 48.0 3.24e-01 98.7% 87.1%
3343550 243.1.1.53 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › WI12 0.54 48.0 3.90e-01 97.4% 56.6%
3926989 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.14e-01 100.0% 24.9%
3659277 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 48.0 3.15e-01 100.0% 24.5%
3351393 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 43.0 4.04e-01 87.2% 71.6%
3725709 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.87e-01 87.2% 78.2%
865437 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.54 48.0 3.88e-01 100.0% 57.0%
3174883 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 45.0 4.03e-01 97.4% 73.9%
4135153 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 44.0 4.52e-01 98.7% 97.3%
3223991 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 46.0 3.15e-01 100.0% 27.9%
4872853 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.52 42.0 3.95e-01 92.3% 89.2%
None 0.52 45.0 3.11e-01 100.0% 28.3%
3925092 5.1.11.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › RMC1_N 0.52 44.0 2.89e-01 100.0% 24.4%
3584572 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.52 44.0 3.13e-01 96.2% 91.0%
3681159 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.94e-01 100.0% 23.6%
5043349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 42.0 3.50e-01 100.0% 51.0%