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pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00035

Bact-Vir

pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00035

Identity

Kingdom:
phage

Quality

76.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: representative
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 55.0 5.02e-01 72.9% 58.2%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.75 52.0 3.33e-01 71.4% 31.3%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.74 64.0 5.01e-01 94.3% 75.7%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.74 51.0 3.34e-01 71.4% 31.9%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 60.0 5.08e-01 94.3% 91.5%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.70 59.0 4.84e-01 97.1% 77.8%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 61.0 4.67e-01 98.6% 74.1%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 56.0 4.92e-01 91.4% 95.4%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.66 55.0 4.08e-01 91.4% 46.0%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.66 47.0 3.12e-01 78.6% 18.7%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 58.0 4.75e-01 98.6% 81.2%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 38.0 3.49e-01 72.9% 42.9%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 48.0 4.10e-01 78.6% 75.7%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.65 45.0 3.77e-01 77.1% 41.6%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.64 48.0 3.23e-01 80.0% 30.5%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 37.0 3.62e-01 72.9% 50.6%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 49.0 3.95e-01 84.3% 81.4%
2gf6A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 48.0 3.94e-01 81.4% 82.0%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.45e-01 94.3% 87.5%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 52.0 4.05e-01 91.4% 80.8%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 50.0 3.80e-01 87.1% 72.8%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 54.0 4.65e-01 95.7% 89.9%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 46.0 4.18e-01 88.6% 58.2%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 48.0 3.89e-01 84.3% 77.4%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 3.85e-01 88.6% 70.8%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.61 48.0 3.26e-01 85.7% 38.3%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.61 40.0 3.28e-01 78.6% 35.8%
4cu7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.40e-01 97.1% 88.4%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.54e-01 75.7% 96.2%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.61 51.0 4.16e-01 95.7% 88.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.60 52.0 4.07e-01 95.7% 54.0%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.60 51.0 3.81e-01 95.7% 74.9%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.06e-01 95.7% 50.3%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.30e-01 72.9% 82.8%
3s9dD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 4.11e-01 82.9% 87.5%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 41.0 4.04e-01 71.4% 68.9%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.59 47.0 3.86e-01 90.0% 77.0%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.16e-01 100.0% 61.3%
1tu5A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.20e-01 98.6% 74.0%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 4.43e-01 97.1% 85.7%
5dmyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.16e-01 97.1% 88.4%
2oiwA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 47.0 3.88e-01 92.9% 85.0%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.42e-01 97.1% 83.2%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.92e-01 81.4% 81.8%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.27e-01 95.7% 91.4%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.37e-01 100.0% 77.4%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 2.94e-01 85.7% 38.7%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.08e-01 100.0% 90.0%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.30e-01 95.7% 86.9%
2dleA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.15e-01 94.3% 86.0%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.86e-01 95.7% 89.0%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.88e-01 97.1% 87.6%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.01e-01 97.1% 87.6%
1lwrA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.06e-01 97.1% 83.3%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.93e-01 90.0% 88.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 39.0 3.71e-01 82.9% 67.9%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 37.0 3.54e-01 94.3% 61.8%
4eq3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.97e-01 95.7% 88.8%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.84e-01 97.1% 85.7%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 42.0 3.13e-01 94.3% 74.6%
1wftA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.75e-01 94.3% 93.3%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.99e-01 94.3% 90.6%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.10e-01 95.7% 97.5%
4rs1B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.80e-01 97.1% 87.4%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.51 41.0 3.38e-01 97.1% 71.3%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.63e-01 97.1% 84.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4987019 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.82 62.0 6.06e-01 80.0% 74.7%
4586147 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.79 65.0 5.87e-01 88.6% 69.5%
146271 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.79 55.0 5.03e-01 72.9% 58.2%
3834843 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.75 52.0 3.30e-01 71.4% 29.5%
4481016 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.75 67.0 5.34e-01 100.0% 79.3%
3953070 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.75 62.0 5.28e-01 90.0% 87.3%
4107647 243.18.1.1 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.74 57.0 5.11e-01 81.4% 64.2%
4878713 331.3.1.42 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Mtb12_C 0.73 62.0 5.52e-01 94.3% 94.1%
4260517 243.18.1.0 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain 0.72 55.0 3.34e-01 81.4% 13.7%
3219435 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.72 64.0 4.59e-01 97.1% 55.2%
3219433 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.71 64.0 5.25e-01 100.0% 84.8%
4180235 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.70 57.0 5.50e-01 90.0% 80.0%
3243901 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.69 49.0 3.17e-01 82.9% 16.8%
4926997 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.69 54.0 4.73e-01 85.7% 88.6%
3219432 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.68 59.0 4.88e-01 94.3% 82.5%
3924939 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.68 50.0 4.23e-01 78.6% 56.5%
3351848 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.67 59.0 4.81e-01 97.1% 87.7%
3280323 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.67 56.0 4.95e-01 94.3% 91.4%
3664186 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.67 56.0 4.36e-01 94.3% 79.2%
3282696 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.67 55.0 4.87e-01 90.0% 87.0%
4992208 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.66 54.0 3.68e-01 100.0% 24.8%
4579550 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.66 48.0 4.00e-01 78.6% 44.6%
3254115 5.1.4.56 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.66 58.0 3.57e-01 100.0% 20.2%
3237754 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 45.0 4.14e-01 71.4% 63.3%
5016827 5090.1.1.11 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.65 44.0 3.74e-01 80.0% 42.0%
3791220 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.64 47.0 3.94e-01 78.6% 51.6%
3338622 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.64 55.0 4.26e-01 97.1% 69.4%
5009292 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.64 48.0 3.35e-01 97.1% 23.7%
4492826 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 44.0 3.70e-01 72.9% 42.6%
1320520 243.16.1.1 a+b two layers › Cystatin-like › hypothetical protein CLOLEP_02462 › hypothetical protein CLOLEP_02462 › DUF6836 0.64 50.0 4.53e-01 88.6% 65.3%
3386770 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.63 48.0 3.68e-01 82.9% 77.6%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.62 55.0 3.70e-01 98.6% 48.3%
3295575 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.61 41.0 3.70e-01 88.6% 49.0%
3726757 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.61 51.0 3.44e-01 100.0% 22.2%
4976837 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.61 41.0 3.30e-01 71.4% 39.3%
4929503 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.60 47.0 3.36e-01 94.3% 28.1%
3387200 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.59 48.0 4.42e-01 91.4% 75.8%
4330018 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.59 40.0 3.96e-01 71.4% 72.0%
4344957 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.58 45.0 4.10e-01 90.0% 61.0%
4025315 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 43.0 3.78e-01 81.4% 77.3%
3628233 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 4.47e-01 97.1% 85.7%
5053325 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 36.0 3.19e-01 78.6% 41.8%
3815797 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.55 44.0 3.40e-01 85.7% 62.0%
4025995 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 47.0 3.22e-01 94.3% 54.6%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 37.0 3.58e-01 72.9% 76.5%
3721174 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.54 41.0 3.39e-01 85.7% 57.1%
3617706 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.54e-01 80.0% 99.0%
3027185 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.91e-01 91.4% 81.4%
3507047 244.4.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.51 43.0 3.94e-01 100.0% 98.0%
3651207 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.51 41.0 2.83e-01 90.0% 64.2%