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pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00055

Bact-Vir

pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00055

Identity

Kingdom:
phage

Quality

51.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 325-381
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fb2A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.73 49.0 2.92e-01 70.2% 70.4%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.71 48.0 2.84e-01 70.2% 74.6%
3awmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.70 47.0 2.81e-01 70.2% 72.5%
2ve3B00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.70 47.0 2.78e-01 70.2% 72.1%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.69 46.0 2.72e-01 70.2% 74.1%
8sppA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.69 48.0 2.91e-01 73.7% 69.6%
5l92A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 48.0 2.88e-01 73.7% 69.2%
4tpoA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 47.0 2.82e-01 73.7% 69.1%
3nojA01 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.67 50.0 3.62e-01 78.9% 87.5%
3ejbB01 3.30.43.20 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › 0.67 48.0 4.16e-01 73.7% 54.2%
1io7A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 47.0 2.83e-01 73.7% 71.3%
2jjnA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 46.0 2.75e-01 73.7% 67.1%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.62 54.0 4.93e-01 100.0% 97.5%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 49.0 3.35e-01 100.0% 62.8%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 46.0 3.09e-01 100.0% 29.6%
3h79A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.60e-01 96.5% 82.6%
3k4iA01 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.54 46.0 3.42e-01 100.0% 73.9%
4rs4B02 3.40.50.11580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › nsp15 middle domain 0.53 44.0 3.55e-01 100.0% 89.6%
3ub8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.03e-01 87.7% 45.2%
5gu6A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 43.0 3.69e-01 98.2% 80.2%
6b5kB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 41.0 2.79e-01 98.2% 71.9%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 40.0 3.21e-01 94.7% 60.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3653538 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.70 48.0 2.80e-01 71.9% 65.9%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.63 55.0 4.73e-01 98.2% 74.4%
4128952 1.1.9.3 beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.63 55.0 4.20e-01 100.0% 65.9%
4577588 1.1.9.3 beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.63 54.0 4.15e-01 100.0% 65.9%
373012 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.62 54.0 4.89e-01 100.0% 96.2%
4180783 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.61 54.0 4.64e-01 100.0% 88.9%
1870510 219.1.1.20 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_14 0.61 52.0 3.26e-01 100.0% 17.8%
4970914 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.60 51.0 3.37e-01 100.0% 26.8%
3995092 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.60 49.0 3.36e-01 96.5% 25.5%
3395932 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 51.0 4.08e-01 98.2% 47.8%
2667647 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.59 50.0 3.21e-01 100.0% 26.4%
3173149 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.59 53.0 4.60e-01 100.0% 81.2%
3236050 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 51.0 4.16e-01 100.0% 51.8%
3202902 1143.1.1.0 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit 0.58 52.0 4.58e-01 100.0% 82.4%
3617912 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.58 51.0 4.02e-01 100.0% 48.3%
3572393 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.58 46.0 4.37e-01 94.7% 72.9%
1790157 2487.1.1.8 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.56 51.0 3.32e-01 100.0% 66.8%
3242537 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.56 50.0 4.48e-01 100.0% 83.7%
3738584 1143.1.1.0 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit 0.56 50.0 4.45e-01 100.0% 83.7%
4317475 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.56 49.0 4.44e-01 100.0% 81.2%
3410778 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.56 49.0 4.52e-01 100.0% 88.0%
5022946 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.56 49.0 4.43e-01 100.0% 86.3%
4945977 1143.1.1.0 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit 0.56 49.0 4.43e-01 100.0% 86.3%
3639105 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.55 45.0 2.66e-01 89.5% 87.3%
3691749 2487.1.1.8 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.55 48.0 3.21e-01 100.0% 58.7%
2099461 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.55 48.0 4.36e-01 100.0% 87.3%
3902139 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.55 44.0 4.21e-01 98.2% 75.7%
4962194 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 47.0 4.40e-01 98.2% 95.7%
4168203 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 46.0 4.16e-01 96.5% 87.5%
5009746 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 46.0 4.26e-01 96.5% 84.0%
3952411 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 46.0 4.13e-01 94.7% 76.2%
3677172 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 47.0 4.27e-01 100.0% 83.7%
5018299 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 48.0 4.30e-01 100.0% 85.0%
5039450 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.54 47.0 4.32e-01 100.0% 93.3%
3999975 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.53 47.0 4.35e-01 100.0% 90.7%
5011748 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.53 46.0 4.30e-01 96.5% 88.6%
4981712 1143.1.1.0 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit 0.53 45.0 4.17e-01 96.5% 82.7%
3926830 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.53 43.0 3.62e-01 98.2% 50.0%
3736295 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.53 43.0 3.09e-01 100.0% 36.1%
3212468 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.53 45.0 3.84e-01 100.0% 58.0%
4968964 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.53 44.0 3.15e-01 100.0% 81.5%
4380614 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.53 44.0 3.16e-01 100.0% 81.9%
4983644 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.52 46.0 4.12e-01 100.0% 86.3%
4038398 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.52 43.0 3.08e-01 100.0% 79.5%
4966555 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.52 43.0 3.16e-01 100.0% 87.8%
3288021 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.50 40.0 3.02e-01 100.0% 38.9%
D2 high residues 873-968
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 52.0 5.09e-01 100.0% 78.3%
2b7yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 4.18e-01 100.0% 96.1%
4c4aA04 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 45.0 3.84e-01 88.5% 98.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 29.0 3.47e-01 84.4% 76.2%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 46.0 3.93e-01 93.8% 60.5%
2jkbA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.88e-01 100.0% 95.8%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 38.0 3.46e-01 76.0% 90.4%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 37.0 3.35e-01 72.9% 59.1%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 38.0 3.55e-01 76.0% 92.5%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 37.0 3.26e-01 76.0% 92.9%
3pnrB00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.64e-01 82.3% 83.7%
1oqwA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.51 37.0 3.26e-01 77.1% 72.2%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.27e-01 87.5% 60.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4935307 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 38.0 4.17e-01 92.7% 67.5%
4351609 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 33.0 2.62e-01 92.7% 29.5%
3341364 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.57 45.0 4.06e-01 84.4% 96.9%
4771748 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.57 51.0 4.15e-01 100.0% 96.1%
3545208 2003.1.5.132 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PRMT_C 0.56 46.0 3.13e-01 88.5% 48.7%
3816395 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.55 42.0 3.64e-01 82.3% 95.4%
3930354 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 47.0 4.42e-01 100.0% 83.5%
3627995 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 43.0 2.80e-01 96.9% 22.9%
D3 medium residues 73-201
PDB
D4 medium residues 230-267_283-297
PDB
D5 medium residues 730-869
PDB