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pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00076

Bact-Vir

pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00076

Identity

Kingdom:
phage

Quality

77.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-95
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04717.19 best Phage_base_V 45.2 1.30e-11 97.5% 94.7%
D2 high residues 102-152
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.94 87.0 6.70e-01 100.0% 94.1%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.82 68.0 4.76e-01 96.1% 29.9%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.77 69.0 4.82e-01 100.0% 54.7%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.76 66.0 4.68e-01 98.0% 32.9%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.73 62.0 4.70e-01 94.1% 40.7%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.73 63.0 5.37e-01 96.1% 80.5%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.72 57.0 4.86e-01 88.2% 97.6%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.72 62.0 4.68e-01 100.0% 80.2%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.70 62.0 4.63e-01 100.0% 81.9%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.69 51.0 3.81e-01 82.4% 42.4%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.69 57.0 4.39e-01 98.0% 38.9%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.68 57.0 4.83e-01 100.0% 71.7%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.65 54.0 3.83e-01 94.1% 78.5%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.65 54.0 3.63e-01 100.0% 71.2%
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.65 49.0 4.30e-01 82.4% 100.0%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 53.0 3.48e-01 94.1% 35.2%
3oulA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 47.0 3.07e-01 82.4% 100.0%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 51.0 3.66e-01 90.2% 92.5%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 3.40e-01 96.1% 36.2%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.62 51.0 4.29e-01 98.0% 51.5%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.61 50.0 2.90e-01 96.1% 10.4%
3qr8A02 6.20.150.10 Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › 0.59 52.0 4.67e-01 100.0% 74.0%
6efaA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 43.0 3.82e-01 80.4% 73.1%
3azwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.19e-01 96.1% 53.9%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 2.92e-01 98.0% 22.1%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 42.0 3.86e-01 82.4% 69.4%
3d5pA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.57 43.0 3.34e-01 88.2% 65.4%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.36e-01 74.5% 48.4%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.86e-01 98.0% 29.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.39e-01 70.6% 65.2%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 40.0 3.49e-01 84.3% 52.3%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.78e-01 96.1% 35.0%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.92e-01 100.0% 32.7%
3w4sA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 46.0 2.94e-01 100.0% 64.1%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.45e-01 86.3% 100.0%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.53 38.0 3.01e-01 80.4% 63.9%
1qi9A00 1.10.606.10 Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 0.53 45.0 2.60e-01 100.0% 22.0%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.53 39.0 3.11e-01 84.3% 77.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.64e-01 88.2% 72.7%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.01e-01 84.3% 46.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
441013 79.1.1.1 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C 0.93 82.0 5.17e-01 94.1% 22.8%
4995814 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.91 83.0 5.70e-01 100.0% 31.9%
5003246 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.83 75.0 5.26e-01 100.0% 40.0%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.81 71.0 5.22e-01 98.0% 39.2%
3471142 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.77 64.0 4.32e-01 94.1% 34.2%
3711004 77.3.1.1 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.76 65.0 4.93e-01 100.0% 40.0%
3764875 77.3.1.1 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.75 64.0 4.33e-01 100.0% 25.8%
3256679 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.74 59.0 5.21e-01 88.2% 86.7%
4030652 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.74 64.0 4.62e-01 100.0% 60.0%
3504473 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.73 62.0 4.26e-01 100.0% 27.2%
3928477 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.73 62.0 4.21e-01 100.0% 25.6%
3470631 292.2.1.3 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.72 62.0 4.68e-01 100.0% 49.2%
1275015 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.71 60.0 4.84e-01 98.0% 48.0%
3717674 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.71 58.0 4.89e-01 98.0% 53.3%
3600232 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.70 61.0 4.10e-01 100.0% 62.0%
3396245 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.70 61.0 4.16e-01 100.0% 32.1%
4247302 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.69 57.0 4.79e-01 98.0% 53.3%
3993048 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.69 58.0 4.59e-01 98.0% 44.5%
4215116 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.68 52.0 3.60e-01 84.3% 23.9%
4974879 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 54.0 3.80e-01 92.2% 96.4%
3972476 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.66 55.0 4.06e-01 98.0% 43.4%
1677788 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 54.0 4.60e-01 100.0% 54.5%
3936855 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 56.0 3.73e-01 100.0% 62.2%
4514947 1032.1.1.0 alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.66 58.0 3.11e-01 100.0% 39.3%
3215840 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 50.0 3.17e-01 92.2% 16.5%
4241750 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.65 54.0 3.66e-01 94.1% 35.0%
3406724 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.64 53.0 3.69e-01 94.1% 55.6%
3987919 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.64 44.0 3.47e-01 72.5% 63.6%
3896807 5.1.4.235 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st 0.63 50.0 2.96e-01 88.2% 19.0%
3900097 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.63 53.0 3.99e-01 100.0% 37.0%
3915702 3426.1.1.1 beta meanders › Telethonin › Telethonin › Telethonin › Telethonin 0.63 54.0 4.58e-01 98.0% 100.0%
3612587 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.62 41.0 4.00e-01 70.6% 60.0%
3211804 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 47.0 3.00e-01 90.2% 16.0%
2388260 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 48.0 3.45e-01 88.2% 29.8%
1563345 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.61 50.0 2.90e-01 96.1% 10.4%
3077250 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.60 46.0 3.96e-01 86.3% 50.0%
3977312 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.60 53.0 3.77e-01 100.0% 35.5%
3495285 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.59 50.0 3.67e-01 100.0% 60.0%
4356813 6043.2.1.0 a+b two layers › yfeY-like › Teichoic acid transporter subunit TagH C-terminal domain › Teichoic acid transporter subunit TagH C-terminal domain 0.59 50.0 3.80e-01 96.1% 70.4%
3946712 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.59 53.0 4.54e-01 100.0% 67.5%
3242245 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.59 43.0 4.01e-01 78.4% 100.0%
3645007 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.59 39.0 3.39e-01 70.6% 49.4%
4957480 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.59 49.0 2.96e-01 96.1% 26.8%
3947013 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 49.0 4.18e-01 100.0% 68.9%
2558219 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.58 46.0 3.45e-01 100.0% 52.1%
3616213 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 45.0 2.86e-01 86.3% 25.1%
3402051 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.56 43.0 3.82e-01 86.3% 73.1%
3902198 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 43.0 2.64e-01 92.2% 76.8%
3241852 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 44.0 3.58e-01 96.1% 80.9%
3400388 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.55 42.0 3.95e-01 86.3% 80.0%
3680446 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 45.0 3.39e-01 94.1% 43.7%
3430637 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 45.0 2.89e-01 100.0% 33.2%
4000819 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 41.0 3.78e-01 86.3% 72.9%
3498756 5.1.4.170 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 0.54 43.0 2.50e-01 96.1% 17.1%
3874056 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 41.0 4.03e-01 94.1% 81.8%
3409941 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.52 39.0 3.62e-01 86.3% 81.4%
3931300 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 38.0 3.39e-01 90.2% 75.6%
3398841 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.51 38.0 3.55e-01 86.3% 78.3%
3749834 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.51 40.0 3.94e-01 96.1% 83.6%
3778012 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.51 37.0 3.32e-01 86.3% 60.0%
3619455 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 39.0 3.42e-01 100.0% 92.6%