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pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00080

Bact-Vir

pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00080

Identity

Kingdom:
phage

Quality

50.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 449-585
PDB
Domain cluster: rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18013.7 best Phage_lysozyme2 83.0 3.30e-23 98.5% 97.8%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ct5A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.86 82.0 7.73e-01 100.0% 91.2%
1wvuB02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.73 67.0 5.96e-01 100.0% 93.4%
1iizA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 57.0 6.06e-01 100.0% 98.3%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 64.0 5.89e-01 100.0% 89.0%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.68 61.0 5.79e-01 96.4% 92.5%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 60.0 5.82e-01 99.3% 92.8%
1hfxA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 54.0 5.73e-01 100.0% 98.4%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.58 27.0 3.59e-01 96.4% 80.8%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 30.0 2.67e-01 70.8% 36.8%
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.53 25.0 3.04e-01 100.0% 67.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289790 235.1.1.23 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.88 84.0 8.01e-01 100.0% 97.4%
1253692 235.1.1.23 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.86 83.0 7.72e-01 100.0% 89.5%
3587750 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.74 55.0 6.15e-01 84.7% 100.0%
3979308 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.72 67.0 6.14e-01 100.0% 96.6%
4282584 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.72 67.0 6.04e-01 100.0% 82.2%
3317412 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.70 65.0 5.64e-01 100.0% 73.5%
4218605 235.1.1.1 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys 0.68 53.0 5.79e-01 95.6% 98.3%
3396023 235.1.1.1 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys 0.67 55.0 5.82e-01 100.0% 99.2%
4980804 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.57 45.0 4.34e-01 83.9% 93.5%
4984499 1030.1.1.0 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.53 30.0 3.13e-01 84.7% 57.6%
4045123 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.51 39.0 3.53e-01 89.8% 57.9%
3715388 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.51 42.0 2.99e-01 89.1% 93.7%
4135463 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.50 39.0 3.13e-01 83.9% 71.7%
D2 medium residues 1-143
PDB