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pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00086
Bact-Virpig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00086
Identity
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-48
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.68 | 57.0 | 4.19e-01 | 100.0% | 39.1% |
| 1p8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 53.0 | 3.95e-01 | 100.0% | 66.7% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 50.0 | 4.13e-01 | 100.0% | 51.5% |
| 6m3aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 47.0 | 4.30e-01 | 89.4% | 95.5% |
| 2vecA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 49.0 | 3.81e-01 | 100.0% | 45.2% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 48.0 | 4.12e-01 | 100.0% | 58.0% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 42.0 | 3.44e-01 | 83.0% | 80.0% |
| 4ljsA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 44.0 | 3.07e-01 | 85.1% | 87.6% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 46.0 | 3.69e-01 | 100.0% | 49.0% |
| 1o5uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 45.0 | 3.85e-01 | 100.0% | 58.0% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 3.03e-01 | 93.6% | 58.1% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 42.0 | 3.24e-01 | 87.2% | 78.2% |
| 6njyA01 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 41.0 | 3.32e-01 | 100.0% | 98.4% |
| 4dbrA02 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.54 | 37.0 | 2.42e-01 | 76.6% | 91.4% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.36e-01 | 89.4% | 73.5% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 39.0 | 3.12e-01 | 83.0% | 74.3% |
| 3myxB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 41.0 | 3.32e-01 | 100.0% | 41.8% |
| 1o75A02 | 2.30.30.470 | Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B | 0.52 | 39.0 | 3.11e-01 | 85.1% | 83.9% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 39.0 | 3.11e-01 | 100.0% | 49.6% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.51 | 40.0 | 2.65e-01 | 95.7% | 20.4% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 40.0 | 3.13e-01 | 100.0% | 44.0% |
| 2bw2A01 | 3.10.20.420 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain | 0.50 | 34.0 | 3.34e-01 | 74.5% | 87.3% |
| 2bvfA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 36.0 | 2.73e-01 | 100.0% | 28.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2770666 | 834.1.1.1 ↗ | a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD | 0.70 | 60.0 | 4.29e-01 | 100.0% | 37.1% |
| 4878841 | 5077.1.1.2 ↗ | extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › PsaD | 0.68 | 58.0 | 4.27e-01 | 100.0% | 40.2% |
| 4948295 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.64 | 44.0 | 3.01e-01 | 74.5% | 45.8% |
| 3248572 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.64 | 47.0 | 4.15e-01 | 87.2% | 53.8% |
| 4006496 | 10.12.1.116 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30441 | 0.63 | 49.0 | 3.78e-01 | 100.0% | 35.6% |
| 4304839 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.62 | 50.0 | 3.65e-01 | 100.0% | 35.5% |
| 4681454 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.61 | 49.0 | 3.48e-01 | 100.0% | 30.6% |
| 5037411 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.60 | 49.0 | 3.96e-01 | 95.7% | 93.0% |
| 3720434 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.59 | 48.0 | 3.39e-01 | 100.0% | 28.6% |
| 4010516 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.59 | 48.0 | 3.58e-01 | 100.0% | 35.9% |
| 3734469 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.59 | 48.0 | 3.44e-01 | 100.0% | 30.6% |
| 3732427 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.59 | 48.0 | 3.41e-01 | 100.0% | 30.5% |
| 3723066 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.59 | 48.0 | 3.33e-01 | 100.0% | 26.9% |
| 3222250 | 10.4.1.9 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 | 0.59 | 46.0 | 3.81e-01 | 100.0% | 54.3% |
| 3918340 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.59 | 46.0 | 4.22e-01 | 95.7% | 81.4% |
| 3265780 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.59 | 49.0 | 4.61e-01 | 100.0% | 78.3% |
| 3725555 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 47.0 | 3.29e-01 | 100.0% | 27.9% |
| 4933556 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 47.0 | 3.80e-01 | 100.0% | 46.4% |
| 4532030 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 46.0 | 3.34e-01 | 100.0% | 31.2% |
| 3698346 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 46.0 | 3.23e-01 | 100.0% | 27.9% |
| 4989936 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.57 | 43.0 | 3.38e-01 | 100.0% | 95.0% |
| 331943 | 10.12.1.27 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 | 0.55 | 45.0 | 3.54e-01 | 100.0% | 42.9% |
| 4975562 | 217.1.1.0 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain | 0.54 | 38.0 | 2.43e-01 | 76.6% | 28.1% |
| 3965201 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.54 | 39.0 | 2.89e-01 | 87.2% | 42.4% |
| 3969466 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 45.0 | 3.51e-01 | 100.0% | 42.5% |
| 3593793 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.53 | 37.0 | 3.70e-01 | 76.6% | 70.0% |
| 4236729 | 10.12.1.33 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ectoine_synth | 0.53 | 44.0 | 3.36e-01 | 100.0% | 38.5% |
| 3056322 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.53 | 38.0 | 3.18e-01 | 89.4% | 75.5% |
| 3367439 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 44.0 | 2.82e-01 | 97.9% | 56.7% |
| 3916871 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 41.0 | 3.04e-01 | 93.6% | 38.6% |
| 5050786 | 4027.1.1.0 ↗ | beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit | 0.51 | 37.0 | 3.79e-01 | 89.4% | 93.3% |
| 3707840 | 10.12.1.97 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C | 0.51 | 39.0 | 2.89e-01 | 100.0% | 32.7% |
| 3594830 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.50 | 38.0 | 2.94e-01 | 100.0% | 36.0% |
| 3232142 | 10.12.1.97 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C | 0.50 | 39.0 | 2.70e-01 | 87.2% | 45.1% |
| 3621133 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 38.0 | 2.37e-01 | 85.1% | 91.5% |