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pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00113

Bact-Vir

pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00113

Identity

Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-80
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 40.0 3.45e-01 75.0% 76.9%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 38.0 3.41e-01 72.5% 90.3%
6gpxB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 40.0 2.95e-01 90.0% 85.2%
6vydA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 43.0 3.04e-01 100.0% 84.6%
5znqA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 3.18e-01 91.3% 99.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002132 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.65 45.0 2.98e-01 100.0% 17.5%
5000805 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.62 34.0 3.37e-01 82.5% 48.9%
3626235 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 42.0 2.78e-01 100.0% 21.8%
5049078 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 44.0 3.66e-01 96.2% 100.0%
3743565 109.4.1.313 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.51 38.0 2.60e-01 81.2% 38.4%
3895975 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 43.0 2.88e-01 97.5% 43.2%
D2 medium residues 81-132
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8sppA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.61 45.0 2.79e-01 84.6% 71.2%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 42.0 3.52e-01 76.9% 51.0%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 39.0 4.02e-01 88.5% 87.0%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.87e-01 80.8% 91.4%
3l6gA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 42.0 3.21e-01 96.2% 95.3%
3mstA00 3.40.190.200 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.51 38.0 2.62e-01 88.5% 27.0%
3fmcC01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 39.0 2.51e-01 88.5% 18.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384232 103.1.1.34 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical 0.61 45.0 4.68e-01 78.8% 93.3%
3309220 103.1.1.34 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical 0.58 43.0 4.16e-01 88.5% 92.3%
3624377 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 36.0 3.22e-01 73.1% 50.0%
4558763 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.52 38.0 2.92e-01 82.7% 86.7%