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pig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00117
Bact-Virpig_ID_3640_F65_scaffold_1_curated_prodigal-single.1__X__X__00117
Identity
- Kingdom:
- phage
Quality
57.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-53
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.90 | 63.0 | 5.83e-01 | 72.5% | 61.3% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.89 | 63.0 | 3.96e-01 | 74.5% | 16.1% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.89 | 66.0 | 4.90e-01 | 78.4% | 35.0% |
| 3cskA02 | 3.30.540.30 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.88 | 59.0 | 4.04e-01 | 70.6% | 22.2% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.88 | 62.0 | 6.40e-01 | 74.5% | 81.2% |
| 2chnB03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.87 | 62.0 | 4.10e-01 | 74.5% | 21.1% |
| 2rd3D00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.87 | 61.0 | 3.93e-01 | 74.5% | 17.4% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.87 | 62.0 | 4.73e-01 | 74.5% | 35.2% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.86 | 61.0 | 4.84e-01 | 74.5% | 40.2% |
| 1vf6C00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.86 | 60.0 | 6.00e-01 | 72.5% | 76.5% |
| 4r42A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.86 | 60.0 | 4.00e-01 | 74.5% | 20.3% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 59.0 | 4.21e-01 | 74.5% | 36.1% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.84 | 57.0 | 4.08e-01 | 72.5% | 26.7% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.84 | 58.0 | 6.19e-01 | 72.5% | 86.4% |
| 2l1lB00 | 1.20.1440.250 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.83 | 65.0 | 4.76e-01 | 84.3% | 63.8% |
| 3h7lB02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.83 | 62.0 | 3.50e-01 | 78.4% | 8.7% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.82 | 57.0 | 4.80e-01 | 74.5% | 64.0% |
| 2gw1A02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.81 | 57.0 | 3.38e-01 | 74.5% | 10.6% |
| 6epyA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.81 | 64.0 | 3.95e-01 | 92.2% | 16.8% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 56.0 | 5.36e-01 | 74.5% | 67.2% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 55.0 | 5.55e-01 | 74.5% | 74.5% |
| 3uitA01 | 1.20.1440.360 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.77 | 59.0 | 4.38e-01 | 82.4% | 52.4% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.77 | 54.0 | 3.98e-01 | 74.5% | 28.5% |
| 1dpsA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.76 | 52.0 | 3.67e-01 | 72.5% | 24.5% |
| 7k3zG01 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.74 | 65.0 | 4.20e-01 | 96.1% | 30.0% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 52.0 | 4.62e-01 | 78.4% | 56.0% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 52.0 | 4.59e-01 | 78.4% | 73.7% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.70 | 55.0 | 4.61e-01 | 86.3% | 50.6% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 48.0 | 4.16e-01 | 72.5% | 48.2% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.67 | 46.0 | 4.01e-01 | 72.5% | 48.1% |
| 4gczA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.66 | 45.0 | 4.30e-01 | 74.5% | 58.5% |
| 4gytA00 | 1.20.120.740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 | 0.64 | 51.0 | 3.57e-01 | 90.2% | 99.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4017128 | 5055.1.1.6 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › CENPU | 0.93 | 67.0 | 4.47e-01 | 74.5% | 23.0% |
| 4012998 | 3291.1.1.53 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CENPU | 0.93 | 67.0 | 4.43e-01 | 74.5% | 22.4% |
| 5015560 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.93 | 68.0 | 4.89e-01 | 76.5% | 31.2% |
| 5050301 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.91 | 65.0 | 5.36e-01 | 74.5% | 45.2% |
| 3368989 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.91 | 65.0 | 4.16e-01 | 74.5% | 18.5% |
| 3699985 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 65.0 | 3.81e-01 | 74.5% | 11.2% |
| 4590767 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.91 | 64.0 | 3.70e-01 | 74.5% | 9.3% |
| 3717958 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.90 | 64.0 | 3.50e-01 | 74.5% | 5.5% |
| 5001524 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.90 | 64.0 | 5.07e-01 | 74.5% | 40.0% |
| 4397104 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.90 | 64.0 | 5.50e-01 | 74.5% | 50.7% |
| 3795106 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.90 | 64.0 | 4.88e-01 | 74.5% | 36.2% |
| 3824631 | 109.4.1.2306 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25999 | 0.89 | 65.0 | 3.96e-01 | 76.5% | 14.5% |
| 5029333 | 4207.1.2.114 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › CHAD | 0.89 | 64.0 | 5.23e-01 | 74.5% | 44.7% |
| 3267005 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.89 | 67.0 | 5.10e-01 | 78.4% | 41.9% |
| 4160609 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.89 | 63.0 | 6.44e-01 | 74.5% | 76.0% |
| 3974197 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.89 | 63.0 | 5.31e-01 | 74.5% | 47.5% |
| 4937862 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.89 | 63.0 | 4.76e-01 | 74.5% | 34.5% |
| 4012407 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.88 | 66.0 | 6.19e-01 | 78.4% | 68.3% |
| 3614078 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.88 | 61.0 | 4.52e-01 | 72.5% | 32.5% |
| 3595966 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.88 | 62.0 | 5.61e-01 | 74.5% | 57.4% |
| 3581869 | 192.14.1.0 ↗ | alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like | 0.88 | 62.0 | 6.31e-01 | 74.5% | 78.0% |
| 4955780 | 3939.1.1.387 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DUF4349 | 0.88 | 62.0 | 5.69e-01 | 74.5% | 60.0% |
| 4948342 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.87 | 63.0 | 4.20e-01 | 76.5% | 21.7% |
| 3417096 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.87 | 65.0 | 4.90e-01 | 78.4% | 37.3% |
| 3504474 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.87 | 62.0 | 4.83e-01 | 74.5% | 41.0% |
| 3934585 | 3755.3.1.465 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A | 0.87 | 62.0 | 4.29e-01 | 74.5% | 25.3% |
| 3627942 | 3755.4.1.1 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 | 0.87 | 62.0 | 4.12e-01 | 74.5% | 21.7% |
| 3716015 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.87 | 63.0 | 5.96e-01 | 76.5% | 88.3% |
| 3253331 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.86 | 64.0 | 5.69e-01 | 78.4% | 58.6% |
| 4979981 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.86 | 60.0 | 4.55e-01 | 72.5% | 34.5% |
| 3601402 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 61.0 | 3.63e-01 | 74.5% | 11.6% |
| 4965632 | 192.7.1.85 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349 | 0.86 | 61.0 | 5.58e-01 | 74.5% | 60.0% |
| 3619577 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.86 | 61.0 | 4.94e-01 | 74.5% | 43.3% |
| 3510771 | 610.4.1.0 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain | 0.86 | 61.0 | 4.77e-01 | 74.5% | 40.0% |
| 3457988 | 192.14.1.1 ↗ | alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like › Siah-Interact_N | 0.85 | 60.0 | 6.39e-01 | 74.5% | 84.4% |
| 3498716 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.85 | 60.0 | 4.59e-01 | 74.5% | 35.5% |
| 3965569 | 150.1.1.183 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Transposase_20 | 0.85 | 60.0 | 4.01e-01 | 74.5% | 21.7% |
| 3976663 | 3812.1.1.1 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E | 0.85 | 63.0 | 5.77e-01 | 78.4% | 63.1% |
| 4446039 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.85 | 60.0 | 5.35e-01 | 74.5% | 54.3% |
| 3484694 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.84 | 59.0 | 3.54e-01 | 74.5% | 11.5% |
| 5016885 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.84 | 60.0 | 5.55e-01 | 76.5% | 63.1% |
| 4127368 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.83 | 59.0 | 5.95e-01 | 74.5% | 78.0% |
| 4041347 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.83 | 58.0 | 4.49e-01 | 74.5% | 34.5% |
| 5081365 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.83 | 59.0 | 4.15e-01 | 74.5% | 26.9% |
| 2161989 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.83 | 58.0 | 6.05e-01 | 74.5% | 83.0% |
| 3554931 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.83 | 61.0 | 6.00e-01 | 78.4% | 77.8% |
| 5044927 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 61.0 | 5.75e-01 | 78.4% | 68.3% |
| 3590755 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 61.0 | 5.75e-01 | 78.4% | 70.0% |
| 3925849 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.81 | 57.0 | 3.69e-01 | 74.5% | 19.1% |
| 5008666 | 192.6.1.12 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › PF27306 | 0.81 | 59.0 | 4.95e-01 | 78.4% | 76.5% |
| 3658790 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.78 | 55.0 | 4.16e-01 | 74.5% | 31.7% |
| 3769416 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.63 | 51.0 | 4.56e-01 | 92.2% | 62.7% |