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pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00085

Bact-Vir

pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00085

Identity

Kingdom:
phage

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 322-404
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04545.23 best Sigma70_r4 34.1 2.10e-08 65.1% 94.0%
D2 medium residues 10-98
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 52.0 5.07e-01 85.4% 68.8%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 58.0 5.38e-01 89.9% 68.4%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.72 47.0 4.97e-01 70.8% 75.6%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.69 53.0 5.41e-01 82.0% 92.9%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.68 47.0 5.23e-01 74.2% 97.0%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 49.0 4.59e-01 84.3% 63.4%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 48.0 4.97e-01 77.5% 85.2%
7dfeA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.64 44.0 3.97e-01 71.9% 92.1%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.63 52.0 4.70e-01 93.3% 82.3%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 43.0 4.09e-01 73.0% 93.4%
1u5kA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.61 52.0 4.64e-01 98.9% 66.4%
1kxpD02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 45.0 4.58e-01 77.5% 78.4%
1jr3C02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.61 42.0 3.82e-01 71.9% 99.2%
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.60 43.0 4.30e-01 75.3% 82.6%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.58 40.0 3.61e-01 71.9% 59.3%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.57 37.0 4.23e-01 87.6% 98.3%
5gp9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 27.0 3.54e-01 88.8% 77.1%
1xaiA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.57 48.0 3.88e-01 97.8% 97.8%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.56 40.0 4.17e-01 76.4% 83.3%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.56 39.0 4.07e-01 71.9% 93.8%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.56 29.0 3.41e-01 96.6% 71.0%
3zfiA00 1.10.890.40 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.56 43.0 4.25e-01 85.4% 79.6%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.56 44.0 4.33e-01 88.8% 89.0%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 39.0 3.38e-01 74.2% 59.4%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 38.0 3.66e-01 74.2% 79.4%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.53 37.0 3.47e-01 74.2% 69.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291547 601.1.1.84 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF350 0.73 58.0 4.92e-01 85.4% 89.0%
5029464 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 56.0 5.92e-01 85.4% 91.3%
4027192 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 62.0 5.99e-01 100.0% 88.0%
5073394 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.68 47.0 4.73e-01 85.4% 71.1%
5063806 3896.1.2.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.68 47.0 4.10e-01 73.0% 85.7%
3316223 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 60.0 5.69e-01 100.0% 95.2%
4995712 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.65 52.0 5.15e-01 86.5% 82.1%
3258297 141.1.1.0 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases 0.64 44.0 3.32e-01 70.8% 65.5%
3951865 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.64 49.0 4.66e-01 85.4% 70.0%
4988447 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 45.0 4.12e-01 74.2% 87.8%
3973703 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.62 48.0 4.79e-01 85.4% 85.6%
4574744 141.1.1.1 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.60 47.0 3.32e-01 86.5% 51.3%
4090475 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.58 40.0 3.84e-01 71.9% 87.6%
5051636 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.57 46.0 4.09e-01 91.0% 69.6%
4165971 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.56 40.0 3.88e-01 74.2% 96.0%
4234794 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.55 38.0 2.82e-01 70.8% 33.3%
5026394 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 38.0 3.57e-01 74.2% 82.6%
5018554 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 36.0 3.51e-01 70.8% 95.0%
3636670 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 46.0 3.73e-01 100.0% 63.9%
None 0.51 41.0 2.74e-01 93.3% 76.8%
4111279 139.2.1.1 few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif › Cytochrom_C552 0.51 41.0 2.74e-01 93.3% 76.6%
4988269 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.51 35.0 3.49e-01 71.9% 69.5%
3440913 4006.1.1.0 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.51 35.0 3.14e-01 73.0% 82.2%
5001811 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.50 37.0 3.69e-01 77.5% 96.7%
D3 medium residues 178-299
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.63 41.0 4.37e-01 91.8% 74.8%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 37.0 4.61e-01 91.8% 97.3%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.62 39.0 4.68e-01 97.5% 97.5%
6yetA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 36.0 4.12e-01 92.6% 80.2%
1c3yA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.59 33.0 3.49e-01 90.2% 61.1%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 36.0 3.29e-01 99.2% 46.2%
2ncoA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 38.0 4.15e-01 97.5% 86.3%
4ol8B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 33.0 3.73e-01 95.9% 81.1%
1hqvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 43.0 3.84e-01 90.2% 72.5%
1ij5A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 44.0 4.35e-01 93.4% 96.2%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.52 29.0 3.41e-01 99.2% 80.0%
2lvvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 46.0 3.79e-01 100.0% 77.3%
1yisA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.50 44.0 3.32e-01 98.4% 67.3%
6pw7A01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.50 29.0 3.50e-01 90.2% 92.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3743127 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.72 46.0 5.67e-01 97.5% 100.0%
3890966 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 38.0 4.55e-01 100.0% 90.0%
3407527 108.1.1.39 alpha arrays › EF-hand › EF-hand-related › EF-hand › P2R3B_EF-hand 0.63 38.0 4.48e-01 100.0% 87.1%
3713438 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.63 35.0 4.47e-01 90.2% 95.7%
3445048 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.62 36.0 4.46e-01 92.6% 93.3%
3622358 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 38.0 4.20e-01 100.0% 77.9%
3598352 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 36.0 4.30e-01 91.0% 84.7%
3878587 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 40.0 4.67e-01 94.3% 95.3%
4028196 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.61 37.0 4.28e-01 90.2% 85.9%
3702995 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 35.0 4.38e-01 91.0% 97.1%
4152436 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 35.0 4.32e-01 91.8% 93.3%
3715619 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.60 35.0 4.34e-01 91.8% 93.3%
3314108 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.60 37.0 4.51e-01 92.6% 98.7%
3407327 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.60 36.0 4.35e-01 93.4% 92.5%
3650545 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 33.0 4.17e-01 90.2% 94.3%
4025493 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 32.0 3.95e-01 92.6% 89.3%
3740104 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 35.0 4.25e-01 97.5% 98.7%
3937043 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 39.0 4.35e-01 100.0% 89.5%
3406914 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.56 35.0 3.81e-01 89.3% 73.3%
3704534 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 35.0 4.02e-01 90.2% 88.2%
3879512 108.1.1.97 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.56 34.0 3.84e-01 96.7% 81.1%
3480305 108.1.1.48 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_9 0.56 36.0 4.27e-01 91.0% 98.8%
4020966 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 40.0 4.18e-01 77.0% 86.1%
3755357 108.1.1.74 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 0.55 35.0 4.12e-01 98.4% 94.1%
3393656 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 34.0 3.19e-01 95.9% 48.4%
4534722 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.54 33.0 3.93e-01 94.3% 93.8%
3187085 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 36.0 4.11e-01 94.3% 93.3%
3893782 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.52 46.0 4.15e-01 98.4% 87.6%
3484223 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 43.0 3.99e-01 91.0% 80.0%
3595757 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.52 32.0 3.59e-01 95.9% 82.2%
3906495 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.52 38.0 4.18e-01 89.3% 95.0%
3728190 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.51 35.0 3.97e-01 92.6% 91.6%
4214027 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.51 30.0 3.68e-01 94.3% 96.0%
3550218 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.51 32.0 3.78e-01 95.9% 92.9%
1560895 108.1.1.1 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.51 34.0 3.71e-01 95.9% 84.0%
4016163 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.50 34.0 3.70e-01 95.9% 84.0%