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pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00162

Bact-Vir

pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00162

Identity

Kingdom:
phage

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-134
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 50.0 4.22e-01 98.0% 63.3%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.55 42.0 3.02e-01 80.6% 96.1%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 47.0 3.18e-01 94.9% 45.6%
1d2sA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.60e-01 86.7% 66.5%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 38.0 3.38e-01 78.6% 49.0%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.80e-01 76.5% 75.0%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.53 42.0 4.22e-01 85.7% 99.0%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 41.0 3.43e-01 85.7% 50.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.40e-01 80.6% 64.1%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.40e-01 82.7% 98.1%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.51 38.0 4.03e-01 81.6% 92.9%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 3.45e-01 83.7% 66.2%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 40.0 3.82e-01 85.7% 80.7%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010371 295.1.1.45 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.68 48.0 4.96e-01 74.5% 100.0%
3295586 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.63 44.0 3.69e-01 75.5% 43.0%
3167783 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.04e-01 87.8% 49.2%
3204911 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.57 45.0 4.21e-01 89.8% 69.2%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.57 45.0 4.53e-01 92.9% 84.0%
5037626 5.1.10.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › FG-GAP_3 0.57 38.0 4.01e-01 73.5% 77.6%
5036255 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.57 50.0 4.78e-01 95.9% 87.8%
3172941 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 3.01e-01 88.8% 49.9%
3273880 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 45.0 3.80e-01 85.7% 99.4%
3323226 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 45.0 3.90e-01 90.8% 56.7%
3618632 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 45.0 3.19e-01 90.8% 57.6%
3960733 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.55 37.0 4.01e-01 70.4% 88.2%
4030473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.93e-01 87.8% 25.9%
5043543 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 44.0 3.26e-01 90.8% 70.7%
3268695 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.53 47.0 3.06e-01 100.0% 42.6%
4075142 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 36.0 3.29e-01 79.6% 51.1%
4969638 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.53 46.0 3.29e-01 98.0% 65.2%
3225336 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 38.0 3.34e-01 73.5% 86.9%
4994580 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 43.0 2.83e-01 91.8% 93.0%
5057645 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.52 40.0 3.85e-01 83.7% 91.3%
3933078 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 47.0 2.79e-01 100.0% 20.3%
4939814 244.3.1.8 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › DUF6951 0.51 36.0 3.57e-01 72.4% 69.5%
5002687 244.3.1.8 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › DUF6951 0.51 36.0 3.59e-01 72.4% 70.0%
3174319 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 44.0 2.92e-01 100.0% 52.0%