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pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00213

Bact-Vir

pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00213

Identity

Kingdom:
phage

Quality

65.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-162
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 74.0 6.95e-01 100.0% 86.8%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.75 65.0 5.14e-01 100.0% 47.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.74 48.0 4.69e-01 86.4% 60.4%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.73 58.0 5.41e-01 100.0% 68.5%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.72 47.0 4.51e-01 88.6% 58.4%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.71 61.0 5.44e-01 100.0% 67.2%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 65.0 5.38e-01 100.0% 74.8%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 65.0 5.25e-01 100.0% 73.3%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 64.0 5.17e-01 100.0% 70.2%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 63.0 5.18e-01 100.0% 74.4%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 63.0 5.19e-01 100.0% 73.7%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 63.0 5.11e-01 100.0% 73.9%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 63.0 4.88e-01 100.0% 63.4%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.69 49.0 5.23e-01 96.6% 86.7%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 62.0 5.17e-01 100.0% 71.1%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 62.0 5.14e-01 100.0% 73.7%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 62.0 5.05e-01 100.0% 73.8%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 62.0 5.00e-01 100.0% 72.0%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 40.0 3.99e-01 90.9% 55.3%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 62.0 4.96e-01 100.0% 70.5%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 62.0 4.75e-01 100.0% 63.0%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 62.0 5.13e-01 100.0% 74.5%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 61.0 4.82e-01 100.0% 65.2%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 61.0 5.03e-01 100.0% 73.5%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 61.0 4.77e-01 100.0% 63.7%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 51.0 4.79e-01 100.0% 68.8%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.65 44.0 4.26e-01 100.0% 62.2%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 58.0 4.81e-01 100.0% 73.7%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 38.0 2.92e-01 98.9% 26.6%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 43.0 4.68e-01 85.2% 84.9%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 57.0 5.15e-01 100.0% 87.4%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 51.0 4.83e-01 100.0% 77.6%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 44.0 3.94e-01 96.6% 57.4%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.35e-01 96.6% 66.9%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.58 38.0 4.01e-01 89.8% 74.4%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.04e-01 87.5% 65.7%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.84e-01 86.4% 69.2%
3w1eA01 3.30.1660.40 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain 0.56 39.0 3.97e-01 73.9% 92.2%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 4.02e-01 100.0% 64.7%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 45.0 3.79e-01 95.5% 51.3%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.87e-01 90.9% 60.3%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 4.55e-01 89.8% 92.6%
4kzsA01 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.55 39.0 4.23e-01 75.0% 97.3%
3f56A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.55 46.0 4.37e-01 92.0% 76.4%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.43e-01 89.8% 70.4%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.88e-01 86.4% 66.7%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.53 37.0 3.51e-01 100.0% 60.4%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 3.40e-01 100.0% 62.6%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.88e-01 75.0% 100.0%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.53 37.0 3.41e-01 73.9% 99.1%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.83e-01 89.8% 62.9%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 30.0 3.04e-01 100.0% 53.8%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.52 44.0 4.17e-01 95.5% 78.0%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.52 45.0 4.29e-01 96.6% 89.6%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.52 44.0 3.64e-01 100.0% 94.3%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.89e-01 96.6% 69.0%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.52 45.0 3.77e-01 100.0% 71.2%
1shsA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 46.0 4.22e-01 100.0% 87.8%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 4.17e-01 89.8% 85.9%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.61e-01 100.0% 64.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 79.0 6.95e-01 100.0% 74.4%
3943172 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 69.0 6.60e-01 100.0% 90.0%
3977382 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 66.0 6.46e-01 98.9% 96.8%
77 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 58.0 5.42e-01 100.0% 69.1%
3744150 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.72 66.0 5.15e-01 100.0% 65.8%
4316037 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 56.0 5.18e-01 100.0% 67.3%
1178487 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.71 65.0 6.36e-01 100.0% 93.8%
3786062 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.71 65.0 5.13e-01 100.0% 70.9%
3741921 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.69 57.0 5.34e-01 95.5% 74.3%
4057590 1.1.5.86 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.68 60.0 5.16e-01 100.0% 61.4%
3907134 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 57.0 4.21e-01 100.0% 35.9%
5051220 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 48.0 4.84e-01 93.2% 74.4%
3702149 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.53e-01 94.3% 61.3%
4960006 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 57.0 5.32e-01 100.0% 84.4%
3913172 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 50.0 3.78e-01 100.0% 35.0%
3324862 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.62 51.0 4.67e-01 90.9% 68.7%
3688095 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 49.0 4.51e-01 92.0% 64.2%
3324420 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.62 49.0 4.64e-01 90.9% 70.0%
3835816 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.62 50.0 4.66e-01 90.9% 70.9%
4970307 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 4.55e-01 89.8% 66.1%
3721508 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.61 48.0 4.52e-01 92.0% 69.1%
4636051 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 49.0 4.65e-01 95.5% 74.3%
3983642 220.1.1.73 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3461 0.60 35.0 3.47e-01 100.0% 54.4%
5049927 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.20e-01 90.9% 61.7%
4452137 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 49.0 4.30e-01 97.7% 60.0%
3371896 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.58 49.0 4.45e-01 92.0% 68.1%
3260183 11.1.1.701 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_SIBA-E_3rd 0.58 46.0 3.12e-01 89.8% 21.3%
3908664 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 34.0 3.98e-01 81.8% 92.6%
4120682 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 45.0 4.32e-01 97.7% 74.0%
3413761 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 50.0 4.22e-01 97.7% 74.5%
4591715 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.56 43.0 3.21e-01 83.0% 38.3%
5038026 319.3.1.1 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.56 45.0 4.31e-01 96.6% 76.0%
3966295 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.56 44.0 4.27e-01 96.6% 76.0%
5019301 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.55 42.0 3.12e-01 83.0% 36.4%
4275176 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.55 42.0 3.19e-01 83.0% 39.6%
3385480 319.3.1.3 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › DUF7494 0.55 45.0 3.88e-01 88.6% 83.7%
4968717 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 41.0 4.42e-01 87.5% 96.0%
4950889 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 42.0 4.48e-01 89.8% 98.7%
3322470 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 48.0 3.69e-01 100.0% 61.0%
5056676 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 43.0 4.11e-01 89.8% 78.0%
3518863 221.1.2.16 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.52 37.0 3.52e-01 100.0% 62.9%
4939095 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.52 41.0 4.42e-01 88.6% 100.0%
3511109 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 41.0 4.23e-01 87.5% 98.8%
3578392 221.1.2.5 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.51 35.0 3.40e-01 71.6% 94.0%
3716605 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 40.0 3.29e-01 85.2% 70.0%
3933872 221.1.2.16 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.50 36.0 3.49e-01 75.0% 97.0%
4935941 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 40.0 4.09e-01 88.6% 89.4%
D2 high residues 167-265
PDB
D3 medium residues 293-318_413-444_475-535
PDB