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pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00219

Bact-Vir

pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00219

Identity

Kingdom:
phage

Quality

80.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-149
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dzdA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.69 34.0 4.20e-01 74.8% 74.3%
2w7vA00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.66 46.0 5.21e-01 100.0% 97.6%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 38.0 4.06e-01 85.6% 65.3%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 42.0 4.10e-01 86.5% 60.2%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.62 38.0 3.99e-01 99.1% 67.0%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.61 40.0 4.05e-01 79.3% 67.6%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 33.0 3.39e-01 80.2% 53.7%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.59 39.0 4.20e-01 99.1% 77.7%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 31.0 3.40e-01 77.5% 60.7%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 49.0 3.86e-01 90.1% 71.4%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 34.0 3.84e-01 82.0% 74.4%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 4.11e-01 96.4% 69.8%
2zzeA04 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.58 46.0 4.87e-01 100.0% 98.9%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 4.48e-01 87.4% 88.7%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.57 45.0 3.90e-01 83.8% 98.3%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 4.09e-01 91.0% 85.5%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.57 34.0 3.81e-01 83.8% 76.7%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 4.21e-01 91.0% 80.2%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.56 32.0 3.93e-01 80.2% 92.5%
2r4fA02 3.90.770.10 Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.56 47.0 3.86e-01 91.9% 66.5%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.55 35.0 3.90e-01 89.2% 82.4%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 42.0 4.25e-01 90.1% 80.4%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 32.0 3.75e-01 100.0% 83.8%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 4.20e-01 87.4% 86.5%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.76e-01 85.6% 69.7%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 45.0 4.10e-01 100.0% 67.1%
3gwmA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.55 40.0 3.86e-01 77.5% 100.0%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.34e-01 85.6% 62.5%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.31e-01 92.8% 97.8%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.98e-01 91.0% 85.9%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.47e-01 89.2% 95.1%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 4.13e-01 92.8% 84.6%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 32.0 3.50e-01 76.6% 75.3%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.53 42.0 3.86e-01 82.9% 98.6%
2crqA01 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.53 38.0 4.29e-01 95.5% 97.7%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 43.0 3.50e-01 90.1% 74.2%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.92e-01 89.2% 79.5%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.51 39.0 3.36e-01 91.0% 50.6%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387300 304.52.1.1 ↗ a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 0.69 34.0 3.99e-01 96.4% 66.3%
3934872 3122.1.1.2 ↗ a+b complex topology › MESD › MESD › MESD › SCVP 0.67 39.0 4.09e-01 78.4% 61.0%
3929061 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.67 43.0 4.61e-01 88.3% 75.8%
3164555 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 38.0 3.47e-01 79.3% 41.3%
3477897 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.65 41.0 4.50e-01 87.4% 78.9%
4943089 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.64 31.0 3.59e-01 77.5% 61.3%
3211626 304.162.1.2 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.64 32.0 3.67e-01 77.5% 62.4%
3706456 304.55.2.8 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.64 37.0 4.04e-01 99.1% 70.0%
3902600 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.63 37.0 3.89e-01 98.2% 63.0%
4233442 304.4.1.54 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.63 41.0 3.99e-01 81.1% 60.0%
3940836 304.8.1.72 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.63 38.0 3.97e-01 76.6% 63.8%
3863095 304.161.1.2 ↗ a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in TMEM16 lipid scramblase › Alpha-beta plait domain in TMEM16 lipid scramblase › Anoct_dimer 0.63 51.0 4.48e-01 89.2% 82.9%
3963401 2484.1.1.61 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 0.62 36.0 3.07e-01 79.3% 35.0%
5043656 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.62 37.0 3.93e-01 85.6% 68.4%
3037399 304.51.1.5 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 0.61 38.0 4.21e-01 87.4% 79.3%
4931923 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 37.0 4.27e-01 92.8% 85.0%
5060043 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.61 32.0 3.60e-01 80.2% 66.3%
4953653 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.60 37.0 4.33e-01 85.6% 92.0%
4943823 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.59 37.0 4.21e-01 80.2% 86.3%
4553370 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.59 38.0 3.77e-01 95.5% 60.9%
4086765 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.59 39.0 3.92e-01 93.7% 66.4%
3996873 148.1.1.33 ↗ alpha arrays › Histone-like › Histone-related › Histone › Pecanex_C 0.59 43.0 3.43e-01 77.5% 100.0%
3973712 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.59 47.0 3.92e-01 99.1% 49.2%
4105022 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.58 37.0 4.07e-01 92.8% 78.9%
4237365 223.1.1.61 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 0.58 39.0 3.78e-01 83.8% 60.8%
4012488 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.58 32.0 3.47e-01 98.2% 61.1%
3969151 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.58 37.0 4.19e-01 84.7% 88.7%
5053097 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 40.0 4.29e-01 89.2% 84.2%
4956709 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.57 35.0 3.73e-01 86.5% 69.5%
3513861 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.57 36.0 4.11e-01 96.4% 87.5%
3500427 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.57 49.0 2.93e-01 94.6% 70.9%
3172537 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.57 42.0 3.68e-01 77.5% 96.4%
4972691 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.56 38.0 4.01e-01 92.8% 77.0%
5008586 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.56 33.0 3.58e-01 87.4% 67.4%
5012937 304.116.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › acVLRF1 0.56 33.0 3.58e-01 86.5% 68.4%
4248927 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.56 45.0 4.31e-01 85.6% 88.8%
None — 0.56 50.0 3.47e-01 100.0% 65.2%
3592365 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 42.0 3.12e-01 80.2% 86.9%
4669035 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.55 41.0 3.76e-01 77.5% 97.2%
4338725 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.55 44.0 4.35e-01 85.6% 97.4%
4288046 2003.1.5.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.55 39.0 3.16e-01 93.7% 40.2%
3580419 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.54 49.0 2.92e-01 100.0% 66.9%
4990439 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.54 34.0 3.52e-01 99.1% 67.0%
3716228 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 42.0 3.95e-01 100.0% 67.1%
3661204 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 34.0 4.01e-01 84.7% 94.7%
3517528 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.70e-01 94.6% 73.0%
4981191 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.54 32.0 3.76e-01 83.8% 91.4%
3755164 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 31.0 3.62e-01 78.4% 84.0%
3511169 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 32.0 3.60e-01 78.4% 77.6%
4169399 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.53 34.0 3.93e-01 82.9% 91.1%
5056060 328.8.1.1 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.53 40.0 3.78e-01 96.4% 65.2%
3578263 304.109.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.53 34.0 3.92e-01 84.7% 97.3%
4965679 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.53 33.0 3.47e-01 91.0% 69.0%
3437951 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.53 42.0 2.76e-01 95.5% 19.8%
3940070 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 37.0 2.72e-01 73.9% 84.7%
3265906 3012.1.1.4 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.52 48.0 4.76e-01 100.0% 99.1%
3187043 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.90e-01 90.1% 87.8%
4512382 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.52 41.0 4.07e-01 92.8% 82.6%
3476540 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.52 33.0 3.22e-01 73.0% 59.2%
4948091 304.116.1.5 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › DUF460 0.51 32.0 3.33e-01 99.1% 67.0%
5045865 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.51 31.0 3.36e-01 99.1% 70.5%
3190328 328.1.1.3 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.51 35.0 3.82e-01 94.6% 84.9%
5023875 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.50 31.0 3.34e-01 99.1% 70.5%