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pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00220
Bact-Virpig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00220
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-112
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 31.0 | 3.57e-01 | 96.2% | 70.3% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.58 | 21.0 | 3.01e-01 | 85.7% | 69.6% |
| 2yd9A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 30.0 | 3.24e-01 | 83.8% | 62.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051051 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.88 | 84.0 | 6.97e-01 | 100.0% | 63.5% |
| 4945101 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.86 | 81.0 | 6.62e-01 | 100.0% | 65.0% |
| 5002913 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.79 | 72.0 | 6.07e-01 | 100.0% | 60.6% |
| 5012315 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.73 | 66.0 | 5.48e-01 | 100.0% | 61.6% |
| 4010838 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.73 | 63.0 | 5.64e-01 | 100.0% | 67.6% |
| 5009771 | 2.21.1.5 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 | 0.69 | 62.0 | 5.30e-01 | 100.0% | 64.1% |
| 4961846 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.68 | 61.0 | 5.15e-01 | 100.0% | 65.1% |
| 4306304 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.62 | 20.0 | 2.68e-01 | 75.2% | 45.0% |
| 3560927 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.57 | 19.0 | 2.94e-01 | 73.3% | 71.4% |
| 3838082 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 31.0 | 3.30e-01 | 90.5% | 62.1% |
| 4000205 | 384.1.1.0 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like | 0.53 | 27.0 | 3.65e-01 | 85.7% | 100.0% |
| 4990169 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 30.0 | 3.66e-01 | 87.6% | 90.8% |
| 4308520 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.51 | 36.0 | 2.60e-01 | 73.3% | 37.7% |
| 3510488 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.50 | 22.0 | 2.43e-01 | 83.8% | 46.7% |
D2
high
residues 126-228
Domain cluster:
rep: IMGVR_UViG_3300038313_000213-3300038313-Ga0134846_000572_31974_33209__D216-306
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01385.26 best | OrfB_IS605 | 85.8 | 3.90e-24 | 96.1% | 81.7% |
| PF01577.23 | Peptidase_S30 | 20.2 | 5.50e-04 | 80.6% | 23.3% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5azsC01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.80 | 56.0 | 3.77e-01 | 71.8% | 86.0% |
| 3dytA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.74 | 56.0 | 4.54e-01 | 79.6% | 88.9% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.70 | 47.0 | 5.43e-01 | 72.8% | 95.9% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.67 | 52.0 | 4.09e-01 | 81.6% | 81.0% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.66 | 24.0 | 3.07e-01 | 84.5% | 54.0% |
| 1yc9A01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.64 | 52.0 | 3.62e-01 | 87.4% | 49.8% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 44.0 | 5.06e-01 | 80.6% | 100.0% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.62 | 50.0 | 4.90e-01 | 87.4% | 96.4% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 42.0 | 4.49e-01 | 78.6% | 82.4% |
| 2xq9A02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.59 | 45.0 | 4.33e-01 | 82.5% | 100.0% |
| 4dhxB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.58 | 41.0 | 4.36e-01 | 86.4% | 84.6% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.58 | 37.0 | 3.80e-01 | 71.8% | 68.0% |
| 4m8aA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 28.0 | 3.34e-01 | 93.2% | 73.1% |
| 6s21B01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.55 | 47.0 | 3.26e-01 | 97.1% | 90.0% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 37.0 | 3.77e-01 | 75.7% | 89.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5075755 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.95 | 91.0 | 7.61e-01 | 100.0% | 69.4% |
| 5011606 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.93 | 89.0 | 7.08e-01 | 100.0% | 61.7% |
| 5011615 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.92 | 74.0 | 5.64e-01 | 100.0% | 41.0% |
| 5064569 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.91 | 86.0 | 7.05e-01 | 100.0% | 68.0% |
| 4943798 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.91 | 86.0 | 6.49e-01 | 100.0% | 50.5% |
| 4994780 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.89 | 85.0 | 6.43e-01 | 100.0% | 49.8% |
| 4934194 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.88 | 85.0 | 6.57e-01 | 100.0% | 54.0% |
| 4976214 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.88 | 83.0 | 6.51e-01 | 100.0% | 58.5% |
| 5055179 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.88 | 83.0 | 6.38e-01 | 100.0% | 53.8% |
| 4995140 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.88 | 84.0 | 7.30e-01 | 100.0% | 73.8% |
| 4933539 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.87 | 82.0 | 6.27e-01 | 100.0% | 53.5% |
| 4997554 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.87 | 81.0 | 7.06e-01 | 100.0% | 75.3% |
| 4934281 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.87 | 82.0 | 7.22e-01 | 100.0% | 75.7% |
| 4945986 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.87 | 82.0 | 6.26e-01 | 100.0% | 60.0% |
| 5064976 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 81.0 | 6.85e-01 | 100.0% | 69.4% |
| 5004517 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.85 | 80.0 | 6.18e-01 | 100.0% | 52.4% |
| 4961801 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.85 | 81.0 | 6.21e-01 | 100.0% | 54.1% |
| 5005258 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.84 | 79.0 | 6.15e-01 | 100.0% | 53.7% |
| 5013223 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.84 | 79.0 | 6.12e-01 | 100.0% | 52.2% |
| 5075725 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 78.0 | 6.80e-01 | 100.0% | 73.8% |
| 4931546 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.82 | 77.0 | 6.11e-01 | 100.0% | 54.6% |
| 5079107 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.80 | 71.0 | 6.52e-01 | 100.0% | 75.4% |
| 4971822 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.79 | 74.0 | 6.10e-01 | 100.0% | 67.4% |
| 5000042 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.79 | 74.0 | 5.77e-01 | 100.0% | 54.6% |
| 5073213 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.79 | 73.0 | 5.61e-01 | 100.0% | 54.1% |
| 4997916 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.79 | 74.0 | 6.25e-01 | 100.0% | 70.0% |
| 5075524 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.79 | 73.0 | 5.83e-01 | 100.0% | 52.8% |
| 4977784 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.76 | 69.0 | 5.25e-01 | 100.0% | 50.6% |
| 3956669 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.75 | 69.0 | 5.67e-01 | 100.0% | 61.1% |
| 4173456 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.75 | 68.0 | 5.48e-01 | 100.0% | 56.4% |
| 4999065 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.74 | 67.0 | 5.85e-01 | 100.0% | 74.8% |
| 3988454 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.72 | 47.0 | 5.61e-01 | 76.7% | 97.1% |
| 3220993 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.71 | 57.0 | 5.08e-01 | 84.5% | 95.8% |
| 3215185 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.70 | 56.0 | 4.99e-01 | 84.5% | 93.1% |
| 4231284 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.67 | 46.0 | 4.52e-01 | 70.9% | 93.6% |
| 4994765 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.63 | 49.0 | 4.98e-01 | 100.0% | 85.0% |
| 3991599 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 47.0 | 4.81e-01 | 79.6% | 88.0% |
| 4157142 | 150.5.1.7 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Mis12 | 0.59 | 40.0 | 3.94e-01 | 85.4% | 62.6% |
| 185321 | 109.4.1.262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_C | 0.57 | 46.0 | 3.54e-01 | 88.3% | 73.2% |
| 3617382 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.57 | 40.0 | 4.27e-01 | 86.4% | 85.6% |
| 3763195 | 1072.1.1.1 ↗ | alpha bundles › Hsp90 co-chaperone Cdc37 N-terminal domain › Hsp90 co-chaperone Cdc37 N-terminal domain › Hsp90 co-chaperone Cdc37 N-terminal domain › CDC37_N | 0.52 | 41.0 | 3.79e-01 | 84.5% | 81.5% |