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pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00254

Bact-Vir

pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00254

Identity

Kingdom:
phage

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 5.87e-01 100.0% 76.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 5.94e-01 100.0% 79.2%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 5.91e-01 100.0% 83.3%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 57.0 5.03e-01 88.7% 95.6%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 62.0 5.35e-01 100.0% 80.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.26e-01 100.0% 75.7%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 49.0 4.47e-01 77.4% 90.1%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.27e-01 100.0% 70.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 47.0 3.67e-01 74.2% 70.8%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 48.0 4.87e-01 100.0% 83.1%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.02e-01 100.0% 43.3%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 35.0 3.06e-01 85.5% 34.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.62 46.0 4.84e-01 93.5% 91.1%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 52.0 3.20e-01 96.8% 27.0%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 43.0 3.09e-01 74.2% 64.4%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 5.24e-01 100.0% 92.6%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.60 44.0 4.24e-01 80.6% 68.9%
1qe5A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.59 49.0 3.20e-01 90.3% 84.2%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.59 45.0 4.11e-01 82.3% 87.8%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.80e-01 87.1% 56.1%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 48.0 3.43e-01 93.5% 40.9%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.49e-01 100.0% 38.4%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.67e-01 95.2% 95.3%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.85e-01 75.8% 97.3%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 2.92e-01 100.0% 34.5%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.56 49.0 3.56e-01 98.4% 46.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.56 42.0 4.19e-01 93.5% 77.8%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.74e-01 85.5% 51.9%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 44.0 2.78e-01 96.8% 23.9%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 47.0 3.98e-01 100.0% 83.8%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 4.18e-01 98.4% 81.5%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 44.0 3.79e-01 93.5% 77.8%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.22e-01 95.2% 68.0%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.52e-01 95.2% 87.3%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.54 33.0 3.41e-01 71.0% 62.3%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.82e-01 93.5% 76.4%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 3.84e-01 87.1% 89.2%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.11e-01 100.0% 32.7%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.54 36.0 3.05e-01 90.3% 41.7%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 40.0 3.53e-01 87.1% 52.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.37e-01 95.2% 58.4%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.12e-01 95.2% 69.1%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 44.0 3.51e-01 96.8% 62.0%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.53 46.0 3.26e-01 100.0% 84.1%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.53 47.0 3.71e-01 100.0% 81.0%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.15e-01 95.2% 71.7%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.52 44.0 3.53e-01 100.0% 68.6%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 38.0 3.92e-01 95.2% 88.1%
1gteA04 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.37e-01 100.0% 96.1%
1okjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 36.0 3.14e-01 72.6% 52.6%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.40e-01 95.2% 55.9%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.68e-01 100.0% 57.7%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 42.0 3.44e-01 100.0% 50.0%
1wthD01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 38.0 3.33e-01 88.7% 90.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.86 69.0 7.04e-01 100.0% 90.0%
3608562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 67.0 4.93e-01 100.0% 34.0%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 64.0 6.35e-01 100.0% 84.4%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 65.0 6.48e-01 100.0% 85.9%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 69.0 6.78e-01 100.0% 90.8%
3612106 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 52.0 4.93e-01 74.2% 58.7%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.76 67.0 5.39e-01 100.0% 52.2%
3519308 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 64.0 6.58e-01 98.4% 95.0%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 66.0 5.62e-01 100.0% 62.1%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.74 63.0 5.74e-01 100.0% 71.2%
3710913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.30e-01 100.0% 65.0%
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 66.0 4.72e-01 100.0% 71.4%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 63.0 5.46e-01 100.0% 63.2%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.89e-01 100.0% 82.9%
3608011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 5.19e-01 100.0% 59.2%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.72 64.0 5.65e-01 100.0% 86.7%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.84e-01 100.0% 80.0%
3322460 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.71 65.0 5.22e-01 100.0% 56.5%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 64.0 5.73e-01 100.0% 75.3%
3650296 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.71 64.0 5.53e-01 100.0% 68.4%
3713672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.14e-01 100.0% 57.4%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 62.0 5.57e-01 100.0% 75.3%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.70 61.0 4.54e-01 100.0% 50.9%
573 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 62.0 5.35e-01 100.0% 80.0%
4235293 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 4.94e-01 100.0% 73.9%
3704929 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.65 58.0 4.35e-01 100.0% 45.3%
3444970 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.65 49.0 3.92e-01 83.9% 67.7%
5019744 2.1.1.384 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30889 0.65 50.0 4.38e-01 85.5% 56.8%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.64 52.0 4.94e-01 100.0% 77.3%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 5.05e-01 100.0% 77.6%
3987211 5.1.3.134 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.61 52.0 3.09e-01 96.8% 38.1%
3396324 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.61 41.0 4.11e-01 71.0% 70.8%
4982277 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 43.0 4.27e-01 74.2% 78.5%
3224914 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.61 52.0 4.28e-01 96.8% 60.0%
4994410 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 4.39e-01 88.7% 90.6%
4983382 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 3.99e-01 95.2% 56.2%
4398068 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.59 52.0 3.18e-01 96.8% 21.7%
3808862 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 49.0 3.89e-01 96.8% 79.0%
4196590 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.58 50.0 3.12e-01 96.8% 22.6%
223811 3583.1.1.1 ↗ few secondary structure elements › FusB family Zn-binding domain › FusB family Zn-binding domain › FusB family Zn-binding domain › FBP_C 0.58 47.0 3.94e-01 96.8% 51.2%
3491822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.59e-01 93.5% 97.3%
4929323 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.07e-01 96.8% 64.5%
4957055 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 46.0 4.35e-01 88.7% 80.0%
3297629 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 41.0 3.84e-01 80.6% 100.0%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 40.0 3.44e-01 80.6% 52.9%
3389027 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.49e-01 95.2% 77.1%
3590674 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.20e-01 85.5% 94.0%
3609111 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.54e-01 100.0% 59.3%
3988067 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.60e-01 80.6% 84.7%
4312097 295.1.1.15 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.53 37.0 2.71e-01 96.8% 26.9%
3891434 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 46.0 3.56e-01 100.0% 70.0%
3911517 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 42.0 3.07e-01 96.8% 50.5%