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pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00270

Bact-Vir

pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00270

Identity

Kingdom:
phage

Quality

81.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 154-222
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.70 48.0 3.99e-01 72.5% 46.7%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.65 45.0 3.92e-01 72.5% 91.7%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.62 42.0 4.18e-01 71.0% 77.5%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 4.04e-01 73.9% 62.2%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 4.11e-01 72.5% 73.0%
3hvwA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 41.0 3.16e-01 71.0% 45.9%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.94e-01 73.9% 67.1%
3qx3B03 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 40.0 3.62e-01 71.0% 63.0%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 41.0 3.53e-01 72.5% 80.2%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 3.68e-01 71.0% 64.9%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.53e-01 71.0% 70.5%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 40.0 3.98e-01 72.5% 86.1%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 40.0 3.66e-01 73.9% 92.8%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 39.0 2.55e-01 71.0% 66.5%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.57 38.0 3.94e-01 71.0% 76.2%
4qycB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.49e-01 71.0% 74.7%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 39.0 3.57e-01 75.4% 81.0%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.55e-01 72.5% 67.4%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.55 37.0 2.90e-01 75.4% 32.0%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.56e-01 73.9% 69.9%
6iaaA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.54e-01 71.0% 66.7%
1httA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 45.0 3.10e-01 97.1% 80.1%
3lduA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.53 39.0 3.01e-01 81.2% 99.4%
4wp3C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 40.0 2.97e-01 81.2% 73.8%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.31e-01 72.5% 64.6%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 36.0 3.67e-01 72.5% 85.3%
3c9gA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 41.0 3.46e-01 87.0% 95.2%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.48e-01 75.4% 79.3%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.40e-01 72.5% 83.7%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.52 35.0 3.42e-01 71.0% 78.5%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.52 35.0 3.23e-01 72.5% 74.3%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.52 45.0 4.42e-01 100.0% 96.1%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.25e-01 73.9% 87.0%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.51 45.0 4.37e-01 100.0% 96.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.63e-01 82.6% 76.2%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.51 45.0 4.39e-01 100.0% 96.1%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.51 42.0 2.87e-01 95.7% 60.4%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 40.0 3.90e-01 92.8% 78.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.18e-01 72.5% 62.4%
3v8vA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.51 37.0 2.82e-01 85.5% 94.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009538 304.37.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.72 49.0 4.73e-01 71.0% 77.5%
4021330 304.37.1.0 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 0.68 46.0 4.43e-01 71.0% 76.2%
4082856 304.37.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.68 46.0 4.51e-01 71.0% 77.3%
5056954 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.65 44.0 4.31e-01 71.0% 77.3%
3911303 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 44.0 4.72e-01 71.0% 90.9%
4565948 304.37.1.0 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 0.64 43.0 4.03e-01 71.0% 64.4%
3823903 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 44.0 3.77e-01 73.9% 65.2%
3404332 304.7.1.1 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.62 43.0 4.00e-01 72.5% 58.9%
3364940 304.9.1.47 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 0.62 43.0 4.00e-01 71.0% 70.6%
4946511 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 48.0 3.06e-01 85.5% 18.3%
3601388 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.61 41.0 4.06e-01 71.0% 81.3%
3594156 304.8.1.49 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.58 39.0 3.87e-01 71.0% 76.0%
3613269 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 45.0 3.03e-01 92.8% 21.7%
3974037 327.16.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.57 39.0 3.82e-01 72.5% 76.0%
3593012 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.57 39.0 3.83e-01 72.5% 74.7%
3390426 304.163.1.1 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.56 39.0 3.50e-01 72.5% 60.0%
3864619 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.56 44.0 4.17e-01 91.3% 88.2%
3621527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 39.0 3.74e-01 82.6% 63.7%
4011415 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.55 37.0 3.57e-01 71.0% 70.6%
3768588 304.8.1.54 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.55 38.0 3.33e-01 71.0% 66.7%
3508487 242.3.1.0 ↗ a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I 0.55 38.0 3.39e-01 73.9% 49.5%
3626328 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.55 37.0 3.64e-01 72.5% 78.8%
3551746 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 37.0 3.47e-01 71.0% 65.6%
4094532 304.4.1.11 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.55 38.0 3.06e-01 73.9% 62.0%
3329738 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 37.0 3.55e-01 72.5% 80.0%
4950693 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.54 47.0 4.45e-01 98.6% 96.5%
4189554 313.1.1.1 ↗ a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C 0.54 44.0 3.54e-01 98.6% 44.1%
3759086 3016.1.1.21 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.53 36.0 3.02e-01 73.9% 90.3%
5066572 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.53 43.0 3.86e-01 97.1% 65.7%
4038458 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.52 35.0 3.29e-01 71.0% 65.3%
5026706 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.21e-01 81.2% 93.1%
5039662 304.48.1.112 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › SatD 0.52 35.0 2.97e-01 71.0% 51.5%
4377718 313.1.1.1 ↗ a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C 0.52 43.0 3.45e-01 98.6% 44.5%
5054757 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.06e-01 73.9% 74.0%
3737673 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.51 36.0 3.32e-01 76.8% 65.0%
4193195 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.50 34.0 3.49e-01 71.0% 92.3%
D2 medium residues 29-88
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2isbA00 3.20.130.10 Alpha Beta › Alpha-Beta Barrel › fumarase › Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain 0.61 42.0 2.97e-01 71.7% 66.8%
2x3lB03 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.59 41.0 4.17e-01 86.7% 74.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587444 211.1.1.9 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › CppA_C 0.51 38.0 3.65e-01 81.7% 85.7%
D3 medium residues 89-140
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.87 79.0 4.95e-01 100.0% 21.3%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.68 35.0 3.17e-01 78.8% 32.4%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 35.0 2.62e-01 90.4% 20.5%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.63 48.0 4.30e-01 84.6% 75.7%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 3.19e-01 80.8% 41.8%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 39.0 3.32e-01 76.9% 57.4%
3c1dB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.70e-01 76.9% 66.1%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.53 37.0 3.04e-01 76.9% 43.0%
1w07A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 37.0 2.73e-01 78.8% 56.0%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.14e-01 78.8% 51.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
317607 2004.1.1.99 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N 0.88 80.0 4.70e-01 100.0% 15.0%
3487912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 3.31e-01 71.2% 35.5%
3928877 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.60 42.0 3.54e-01 75.0% 82.2%
3282605 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.57 40.0 3.49e-01 73.1% 83.7%
4943784 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.24e-01 82.7% 98.4%
3228409 5001.1.1.16 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srt 0.56 45.0 2.87e-01 94.2% 89.5%
4982137 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.53 37.0 3.37e-01 82.7% 52.0%
3494855 4970.1.1.23 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › ASC 0.53 37.0 3.04e-01 78.8% 38.3%
5013332 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.21e-01 76.9% 70.2%
1248651 101.1.2.193 ↗ alpha arrays › HTH › HTH › winged helix domain › Hen1_LCD 0.52 34.0 2.71e-01 75.0% 28.1%
4929381 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.16e-01 78.8% 50.7%
3786964 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 40.0 2.86e-01 94.2% 71.4%
5017852 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 35.0 3.20e-01 75.0% 86.7%
4940863 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.08e-01 80.8% 47.0%
3590624 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.50 36.0 3.22e-01 78.8% 96.2%
3415216 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.50 38.0 3.09e-01 92.3% 91.7%