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pig_ID_3687_F49_scaffold_3_curated_prodigal-single.1__X__X__00085

Bact-Vir

pig_ID_3687_F49_scaffold_3_curated_prodigal-single.1__X__X__00085

Identity

Kingdom:
phage

Quality

42.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1227-1316
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 38.2 2.00e-09 60.0% 89.7%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 70.0 5.71e-01 95.6% 91.3%
4je5C00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 51.0 3.17e-01 93.3% 65.4%
6et0A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 36.0 3.06e-01 77.8% 37.1%
1qlbA04 3.10.20.820 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 31.0 3.12e-01 86.7% 51.1%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.31e-01 90.0% 96.7%
1h8eG02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.55 45.0 3.60e-01 88.9% 90.4%
4ri6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 32.0 2.96e-01 85.6% 45.4%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.52 35.0 3.00e-01 70.0% 63.9%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.52 27.0 3.24e-01 71.1% 76.3%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.52 42.0 2.49e-01 85.6% 14.6%
5b5lA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 35.0 2.70e-01 71.1% 98.6%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 38.0 3.45e-01 81.1% 69.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618364 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.84 66.0 6.05e-01 82.2% 75.7%
3275547 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.81 60.0 5.58e-01 77.8% 90.9%
3597121 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 40.0 2.72e-01 81.1% 19.0%
5005923 5061.1.1.1 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.63 43.0 2.70e-01 88.9% 13.5%
4546878 5061.1.1.2 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon 0.63 43.0 2.70e-01 88.9% 13.5%
5059579 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.59 36.0 3.02e-01 76.7% 33.1%
3902362 2004.1.1.81 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP 0.59 38.0 3.09e-01 92.2% 35.2%
4626792 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 44.0 3.71e-01 84.4% 65.5%
3656655 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.55 46.0 3.69e-01 92.2% 79.8%
3283808 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.54 32.0 2.72e-01 74.4% 30.9%
3575976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 43.0 3.67e-01 84.4% 68.3%
3308403 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.54 42.0 2.93e-01 87.8% 81.5%
3489283 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 42.0 3.57e-01 84.4% 65.9%
4436110 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.51 32.0 2.81e-01 76.7% 36.7%
3601656 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 42.0 2.93e-01 95.6% 95.4%
3585208 109.4.1.388 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dopey_N 0.51 46.0 3.43e-01 97.8% 40.5%
3286903 304.55.1.8 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › TrwC 0.50 37.0 2.63e-01 77.8% 47.4%
D2 medium residues 492-604
PDB
D3 medium residues 1104-1194
PDB