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pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00028
Bact-Virpig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00028
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-130
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.83 | 60.0 | 5.14e-01 | 98.2% | 49.1% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.70 | 45.0 | 4.70e-01 | 86.8% | 71.2% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 40.0 | 4.48e-01 | 84.2% | 72.7% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 53.0 | 4.84e-01 | 100.0% | 61.9% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.69 | 53.0 | 5.82e-01 | 93.9% | 97.9% |
| 1dr9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 39.0 | 4.21e-01 | 83.3% | 73.7% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.63 | 45.0 | 4.68e-01 | 99.1% | 81.7% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 32.0 | 3.84e-01 | 78.1% | 73.1% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.61 | 55.0 | 4.27e-01 | 99.1% | 85.5% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 56.0 | 5.26e-01 | 100.0% | 91.2% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 39.0 | 4.20e-01 | 83.3% | 74.0% |
| 2qtlA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 36.0 | 3.75e-01 | 84.2% | 62.6% |
| 4dqlB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 37.0 | 3.79e-01 | 88.6% | 63.3% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 3.64e-01 | 75.4% | 63.1% |
| 1ddgA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 37.0 | 3.74e-01 | 93.0% | 62.3% |
| 2pmzB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.57 | 43.0 | 4.18e-01 | 78.1% | 94.4% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.57 | 37.0 | 3.87e-01 | 81.6% | 71.8% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 38.0 | 3.90e-01 | 93.0% | 71.4% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 33.0 | 3.49e-01 | 70.2% | 66.3% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 41.0 | 3.95e-01 | 93.0% | 69.5% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 34.0 | 3.39e-01 | 93.0% | 58.2% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 33.0 | 3.81e-01 | 75.4% | 88.5% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.53 | 47.0 | 4.47e-01 | 100.0% | 91.9% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.52 | 47.0 | 3.86e-01 | 100.0% | 81.9% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.08e-01 | 77.2% | 63.3% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.52 | 40.0 | 3.03e-01 | 82.5% | 62.2% |
| 1z2zA01 | 3.30.2350.20 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain | 0.51 | 45.0 | 3.59e-01 | 98.2% | 92.1% |
| 4z1xA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 35.0 | 3.33e-01 | 95.6% | 57.3% |
| 5ixgA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.51 | 40.0 | 3.54e-01 | 84.2% | 82.1% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 37.0 | 3.82e-01 | 100.0% | 80.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.84 | 70.0 | 6.74e-01 | 100.0% | 78.4% |
| 3943172 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.83 | 66.0 | 7.01e-01 | 99.1% | 94.0% |
| 184471 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.83 | 60.0 | 6.86e-01 | 98.2% | 100.0% |
| 4141852 | 1.1.13.56 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ | 0.81 | 59.0 | 6.78e-01 | 97.4% | 100.0% |
| 3941988 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 69.0 | 6.89e-01 | 100.0% | 99.1% |
| 5007131 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.73 | 46.0 | 4.96e-01 | 87.7% | 74.7% |
| 3288253 | 1.1.13.55 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 | 0.71 | 49.0 | 5.45e-01 | 100.0% | 90.0% |
| 3948350 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.70 | 58.0 | 6.17e-01 | 98.2% | 100.0% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 55.0 | 5.65e-01 | 87.7% | 87.3% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.69 | 61.0 | 6.28e-01 | 99.1% | 100.0% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 53.0 | 5.19e-01 | 94.7% | 77.6% |
| 5079559 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 59.0 | 5.97e-01 | 100.0% | 98.3% |
| 4957562 | 1.1.13.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 | 0.66 | 59.0 | 6.07e-01 | 100.0% | 100.0% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 58.0 | 5.37e-01 | 93.9% | 98.6% |
| 3924486 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.65 | 53.0 | 3.43e-01 | 87.7% | 19.8% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.64 | 58.0 | 5.26e-01 | 100.0% | 90.8% |
| 4014778 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.64 | 59.0 | 4.59e-01 | 100.0% | 66.8% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.62 | 57.0 | 5.68e-01 | 99.1% | 100.0% |
| 3183073 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.62 | 57.0 | 4.27e-01 | 100.0% | 51.5% |
| 3595114 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 42.0 | 4.37e-01 | 86.8% | 76.2% |
| 4214302 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.60 | 47.0 | 3.75e-01 | 93.9% | 42.3% |
| 3187986 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.60 | 41.0 | 4.25e-01 | 82.5% | 76.2% |
| 4020238 | 1.1.7.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 | 0.58 | 46.0 | 4.24e-01 | 99.1% | 65.3% |
| 3723056 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 46.0 | 4.07e-01 | 99.1% | 58.2% |
| 5003311 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 51.0 | 5.23e-01 | 99.1% | 100.0% |
| 4462681 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.55 | 41.0 | 3.36e-01 | 78.1% | 59.6% |
| 3990957 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 31.0 | 2.99e-01 | 93.0% | 47.4% |
| 3678951 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.55 | 40.0 | 3.23e-01 | 77.2% | 55.3% |
| 3807657 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.54 | 40.0 | 3.16e-01 | 77.2% | 52.0% |
| 3415867 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.54 | 39.0 | 3.12e-01 | 77.2% | 56.3% |
| 3428351 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 38.0 | 3.27e-01 | 78.1% | 47.2% |
| 4952370 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 41.0 | 3.65e-01 | 82.5% | 62.6% |
| 3710599 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.51 | 38.0 | 2.95e-01 | 78.1% | 35.6% |
| 3595076 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 38.0 | 2.95e-01 | 78.1% | 35.6% |
| 3465961 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.51 | 37.0 | 3.08e-01 | 78.1% | 50.9% |
D2
medium
residues 131-233
Domain cluster:
rep: IMGVR_UViG_3300028591_005687-3300028591-Ga0247611_100278185__D137-230
D3
medium
residues 234-272_400-483
D4
medium
residues 273-399