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pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00057
Bact-Virpig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00057
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 459-518
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gu7A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 3.20e-01 | 96.7% | 31.5% |
| 1howA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 42.0 | 2.89e-01 | 100.0% | 45.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3776032 | 3939.1.1.52 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Mis12 | 0.77 | 46.0 | 3.72e-01 | 71.7% | 32.7% |
| 3990121 | 2002.1.1.105 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C | 0.55 | 48.0 | 3.15e-01 | 100.0% | 37.1% |
D2
medium
residues 106-229_377-458
Domain cluster:
rep: IMGVR_UViG_3300035312_000244-3300035312-Ga0393750_008065_4082_5470__D34-230_308-363
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.68 | 41.0 | 5.11e-01 | 88.3% | 96.9% |
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.58 | 25.0 | 3.40e-01 | 77.7% | 76.2% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.54 | 20.0 | 2.94e-01 | 87.4% | 74.7% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.54 | 32.0 | 4.02e-01 | 74.8% | 99.1% |
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 28.0 | 3.53e-01 | 77.2% | 83.9% |
| 2kvkA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 30.0 | 3.47e-01 | 77.2% | 76.4% |
| 1m4jA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 28.0 | 3.41e-01 | 73.8% | 82.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3268419 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 28.0 | 3.59e-01 | 74.3% | 87.8% |
| 140043 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 30.0 | 3.47e-01 | 77.2% | 76.4% |
D3
medium
residues 230-278_346-376
Domain cluster:
rep: IMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027545__D236-264_334-368
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07230.17 best | Portal_T4 | 42.9 | 3.90e-11 | 67.5% | 10.5% |