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pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00063
Bact-Virpig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00063
Identity
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-55
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mvtA00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.63 | 44.0 | 4.66e-01 | 74.5% | 85.1% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 50.0 | 2.97e-01 | 100.0% | 11.6% |
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.57 | 43.0 | 3.62e-01 | 83.6% | 67.6% |
| 2lo0A00 | 1.10.286.70 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain | 0.57 | 37.0 | 3.96e-01 | 70.9% | 80.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4681908 | 518.1.1.1 ↗ | alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N | 0.63 | 52.0 | 4.80e-01 | 98.2% | 89.3% |
| 184798 | 3443.1.1.1 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain › Get5_C | 0.57 | 37.0 | 3.96e-01 | 70.9% | 80.0% |
| 3972364 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.56 | 46.0 | 2.95e-01 | 96.4% | 69.2% |
| 4081234 | 2003.1.5.233 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF27593 | 0.54 | 44.0 | 2.86e-01 | 92.7% | 42.3% |
| 3259075 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.51 | 39.0 | 3.57e-01 | 87.3% | 82.1% |
D2
medium
residues 56-132
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.68 | 46.0 | 3.93e-01 | 70.1% | 88.9% |
| 2b1eA04 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.64 | 43.0 | 3.72e-01 | 72.7% | 42.5% |
| 1dd9A03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.60 | 40.0 | 4.47e-01 | 85.7% | 89.8% |
| 3ungC04 | 1.20.120.1260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle | 0.60 | 45.0 | 4.26e-01 | 100.0% | 64.9% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.59 | 45.0 | 3.97e-01 | 98.7% | 56.9% |
| 2vtyA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.59 | 44.0 | 3.60e-01 | 98.7% | 43.1% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.59 | 52.0 | 4.92e-01 | 100.0% | 85.9% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 49.0 | 4.02e-01 | 94.8% | 93.1% |
| 4ipeB02 | 3.30.230.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 45.0 | 3.61e-01 | 90.9% | 78.2% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 46.0 | 3.90e-01 | 100.0% | 69.1% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 44.0 | 3.78e-01 | 94.8% | 93.3% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 47.0 | 3.65e-01 | 100.0% | 87.3% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 45.0 | 4.21e-01 | 94.8% | 95.8% |
| 3u5ei01 | 1.10.10.1760 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 | 0.52 | 35.0 | 3.67e-01 | 93.5% | 77.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963130 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.71 | 52.0 | 4.11e-01 | 76.6% | 65.8% |
| 4993560 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.67 | 56.0 | 4.23e-01 | 92.2% | 85.4% |
| 3981145 | 5044.1.1.10 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like › IcmF-related_N | 0.59 | 46.0 | 4.36e-01 | 85.7% | 89.5% |
| 2337267 | 5000.3.1.1 ↗ | alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 | 0.59 | 49.0 | 4.24e-01 | 90.9% | 60.0% |
| 5034673 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.58 | 49.0 | 3.98e-01 | 93.5% | 94.7% |
| 3225080 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 51.0 | 4.35e-01 | 100.0% | 88.0% |
| 5014537 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.56 | 47.0 | 3.81e-01 | 98.7% | 85.5% |
| 3602572 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 46.0 | 3.85e-01 | 93.5% | 65.3% |
| 4000385 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.56 | 49.0 | 3.37e-01 | 97.4% | 93.3% |
| 4927302 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.55 | 47.0 | 3.92e-01 | 97.4% | 72.9% |
| 4995163 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.55 | 47.0 | 3.36e-01 | 97.4% | 68.3% |
| 3987415 | 601.1.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB | 0.54 | 46.0 | 3.80e-01 | 100.0% | 75.3% |
| 3501398 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.53 | 41.0 | 4.30e-01 | 93.5% | 91.4% |
| 4588041 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.53 | 46.0 | 4.42e-01 | 100.0% | 91.1% |
| 3896722 | 622.6.1.0 ↗ | alpha bundles › YvfG-like › NLR family member X1 C-terminal domain › NLR family member X1 C-terminal domain | 0.53 | 41.0 | 2.69e-01 | 83.1% | 39.4% |
| 3389963 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.53 | 41.0 | 4.32e-01 | 96.1% | 92.9% |