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pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00108

Bact-Vir

pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00108

Identity

Kingdom:
phage

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-86
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nc7A00 1.10.10.1250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase, subunit delta, N-terminal domain 0.73 49.0 4.94e-01 73.1% 68.4%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.67 43.0 4.18e-01 91.0% 57.3%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 47.0 5.24e-01 74.4% 100.0%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 52.0 5.08e-01 98.7% 93.2%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.58 48.0 4.87e-01 93.6% 97.4%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 42.0 4.57e-01 76.9% 96.8%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 41.0 4.24e-01 93.6% 83.6%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.56 39.0 4.10e-01 73.1% 83.1%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.79e-01 100.0% 94.4%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 4.12e-01 97.4% 81.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 39.0 3.97e-01 88.5% 75.6%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 36.0 3.53e-01 100.0% 61.6%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 38.0 3.81e-01 73.1% 78.0%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.54 35.0 3.62e-01 91.0% 70.3%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 38.0 3.72e-01 73.1% 92.8%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.54 37.0 3.66e-01 71.8% 83.3%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.53 46.0 3.82e-01 100.0% 96.6%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 35.0 3.69e-01 91.0% 75.3%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 40.0 3.62e-01 85.9% 73.5%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 3.25e-01 94.9% 71.7%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 32.0 3.38e-01 91.0% 72.1%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 40.0 3.39e-01 88.5% 71.0%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.50 35.0 2.90e-01 74.4% 74.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3727213 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 57.0 6.22e-01 74.4% 89.2%
3431444 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 54.0 6.02e-01 73.1% 91.7%
3720948 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 54.0 5.40e-01 74.4% 73.4%
3741970 101.33.1.0 ↗ alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain 0.75 59.0 5.25e-01 82.1% 80.0%
3500575 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.67 47.0 5.22e-01 73.1% 100.0%
4022519 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.63 44.0 4.32e-01 73.1% 83.5%
4998160 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 49.0 3.28e-01 91.0% 20.6%
4944936 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.61 41.0 4.30e-01 73.1% 77.1%
3943035 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.61 43.0 4.62e-01 76.9% 89.2%
3554511 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.60 49.0 4.92e-01 98.7% 87.5%
3404571 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.59 48.0 4.81e-01 100.0% 87.5%
4464531 7000.1.1.1 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 0.57 50.0 4.93e-01 97.4% 95.3%
3393979 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.57 51.0 4.58e-01 100.0% 94.5%
4939273 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 38.0 4.02e-01 100.0% 77.1%
3944931 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 35.0 3.41e-01 91.0% 55.6%
3889516 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.55 50.0 4.51e-01 100.0% 74.3%
3398316 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.54 46.0 4.51e-01 100.0% 87.1%
4594772 589.1.2.1 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.53 36.0 2.78e-01 71.8% 55.9%
D2 high residues 96-164
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 63.0 6.29e-01 98.6% 87.5%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.69 59.0 5.21e-01 100.0% 68.5%
3tqgB01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.67 58.0 4.04e-01 100.0% 28.2%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.66 56.0 5.20e-01 98.6% 73.3%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 45.0 4.16e-01 92.8% 56.8%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.64 54.0 4.74e-01 95.7% 86.1%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 55.0 4.47e-01 100.0% 92.2%
3b5iA02 1.10.1200.220 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.63 47.0 4.30e-01 81.2% 89.5%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 40.0 3.94e-01 71.0% 59.5%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 55.0 4.42e-01 100.0% 92.1%
1irjA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 46.0 4.33e-01 79.7% 71.8%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.61 53.0 3.65e-01 100.0% 63.1%
2m7bA00 1.10.10.1920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 49.0 4.83e-01 95.7% 88.3%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.59 46.0 4.37e-01 88.4% 96.6%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 51.0 4.15e-01 100.0% 94.3%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 48.0 4.58e-01 91.3% 87.7%
3ujpB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.59 47.0 3.73e-01 89.9% 80.4%
6xy4A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 49.0 4.09e-01 100.0% 52.8%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.58 40.0 4.07e-01 72.5% 79.1%
2jbyA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.57 46.0 3.92e-01 100.0% 51.2%
1hlbA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 3.82e-01 100.0% 87.9%
4urpA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 45.0 3.38e-01 92.8% 48.3%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.54 42.0 4.14e-01 88.4% 84.0%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.53 43.0 4.07e-01 100.0% 75.3%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 45.0 3.52e-01 100.0% 43.1%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 39.0 3.17e-01 81.2% 55.2%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 39.0 3.02e-01 85.5% 74.7%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 43.0 3.20e-01 100.0% 58.4%
1s0pA01 1.25.40.330 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain 0.50 42.0 3.26e-01 97.1% 83.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3166992 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.80 71.0 6.93e-01 100.0% 89.3%
3589953 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.76 70.0 4.45e-01 100.0% 60.3%
4941012 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.73 67.0 3.93e-01 100.0% 25.7%
3227634 101.38.1.1 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › C_tripleX 0.73 62.0 6.40e-01 100.0% 100.0%
3924078 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.72 58.0 3.93e-01 88.4% 38.8%
3191588 610.3.1.0 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.70 62.0 4.40e-01 100.0% 34.0%
4304916 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 62.0 5.52e-01 100.0% 73.0%
4964416 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.70 61.0 3.58e-01 100.0% 22.1%
3511626 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.69 60.0 4.53e-01 98.6% 92.4%
5048577 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.68 57.0 5.47e-01 94.2% 90.0%
3612868 610.3.1.3 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.67 55.0 4.14e-01 98.6% 35.6%
4498171 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 58.0 5.71e-01 100.0% 93.3%
3931225 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.66 56.0 4.28e-01 98.6% 86.5%
4113324 101.1.17.43 ↗ alpha arrays › HTH › HTH › FF domain › DUF3043 0.61 52.0 4.57e-01 100.0% 88.2%
3999743 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 52.0 4.06e-01 100.0% 95.6%
5057021 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.61 41.0 4.09e-01 97.1% 66.7%
5012907 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.60 48.0 3.43e-01 97.1% 28.6%
3821523 5069.1.3.122 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PLAC8 0.59 41.0 3.48e-01 72.5% 80.9%
4957771 5069.1.3.137 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF7521 0.58 41.0 3.79e-01 73.9% 83.3%
3693616 604.9.1.8 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › DUF6594 0.58 47.0 4.52e-01 94.2% 85.0%
4009630 162.1.1.5 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PF30457 0.57 47.0 4.27e-01 94.2% 97.0%
3767618 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.57 42.0 3.54e-01 79.7% 64.8%
4987417 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.55 48.0 4.72e-01 98.6% 97.3%
166468 191.1.1.11 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.55 47.0 3.88e-01 100.0% 69.2%
4933827 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.54 46.0 3.19e-01 100.0% 53.6%
3688934 603.2.1.23 ↗ alpha bundles › STAT-like › STAT › STAT › DUF7607 0.54 46.0 4.05e-01 100.0% 82.7%
3718958 5082.1.1.0 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like 0.53 41.0 2.96e-01 84.1% 43.8%
5030459 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 40.0 2.65e-01 81.2% 50.7%
2820008 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.53 41.0 3.28e-01 88.4% 84.3%
3696174 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 45.0 3.68e-01 100.0% 50.0%