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pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00176

Bact-Vir

pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00176

Identity

Kingdom:
phage

Quality

91.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-177
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zrlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.68 49.0 5.49e-01 94.2% 98.3%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.68 56.0 5.67e-01 92.9% 87.8%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.67 48.0 5.45e-01 89.1% 100.0%
6u8yK01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.64 36.0 3.67e-01 78.8% 55.8%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 38.0 4.46e-01 82.7% 86.1%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.63 48.0 5.31e-01 94.9% 100.0%
7ztbB01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 52.0 5.18e-01 96.8% 99.4%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 50.0 5.12e-01 93.6% 98.7%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 50.0 4.80e-01 94.2% 87.4%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 27.0 3.33e-01 94.9% 71.9%
2rjbA00 3.10.180.80 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › Uncharacterised protein PF07063, DUF1338 0.54 47.0 3.46e-01 94.2% 91.9%
1a5yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 40.0 3.24e-01 75.0% 74.3%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 40.0 3.23e-01 77.6% 61.0%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 40.0 3.27e-01 77.6% 66.4%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 39.0 3.28e-01 77.6% 65.9%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 38.0 3.13e-01 76.3% 66.0%
3ubfA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 31.0 3.66e-01 80.8% 89.2%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.51 33.0 3.94e-01 89.7% 96.2%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029528 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.71 53.0 5.33e-01 95.5% 76.2%
4032285 316.1.1.11 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.69 52.0 5.17e-01 100.0% 75.2%
4946576 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.66 38.0 3.73e-01 82.1% 51.7%
2652063 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 36.0 3.53e-01 78.2% 50.0%
3926066 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.65 50.0 5.21e-01 94.2% 86.9%
4106050 316.1.1.6 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.63 57.0 4.93e-01 99.4% 91.4%
4936766 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.62 54.0 5.28e-01 98.1% 85.9%
5001533 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.62 37.0 3.82e-01 81.4% 61.5%
5009330 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.62 37.0 3.75e-01 82.7% 58.1%
4946325 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 32.0 3.82e-01 76.9% 72.4%
4947287 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.62 35.0 3.70e-01 77.6% 61.4%
4946229 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.60 37.0 3.63e-01 80.1% 56.4%
3633420 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 56.0 4.97e-01 100.0% 72.3%
2439583 3081.1.1.0 a+b complex topology › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 › Envelope glycoprotein GP1 0.60 32.0 3.72e-01 75.6% 71.8%
5060886 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 48.0 4.67e-01 91.7% 76.0%
3259679 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 53.0 5.41e-01 95.5% 99.3%
3207188 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 51.0 4.53e-01 92.3% 73.2%
4969719 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.59 36.0 3.69e-01 80.1% 62.7%
4930534 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.58 36.0 3.58e-01 78.2% 56.8%
3740269 316.1.1.24 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm 0.58 54.0 4.96e-01 100.0% 98.5%
5006022 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.56 35.0 3.49e-01 87.2% 58.9%
1160800 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 27.0 3.79e-01 94.2% 96.0%
4977528 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.56 32.0 3.44e-01 84.6% 63.7%
3235791 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 41.0 3.32e-01 75.0% 69.8%
3927079 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 41.0 3.23e-01 76.3% 60.9%
3801135 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.55 40.0 3.26e-01 75.0% 73.4%
3791570 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 40.0 3.15e-01 75.0% 72.2%
3882821 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.54 39.0 3.13e-01 73.7% 73.8%
4002086 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 31.0 3.20e-01 80.8% 57.3%
3533174 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 39.0 3.18e-01 75.0% 73.6%
3924984 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 40.0 3.28e-01 77.6% 64.2%
3625276 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 40.0 3.24e-01 76.3% 67.6%
3746031 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.53 40.0 3.20e-01 77.6% 62.3%
3693837 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 39.0 3.05e-01 77.6% 60.3%
3498950 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 38.0 3.10e-01 75.0% 66.2%
3279552 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.53 37.0 3.52e-01 71.8% 83.7%
3481161 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.52 38.0 3.14e-01 75.0% 66.2%
4149459 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 44.0 4.50e-01 92.3% 100.0%
3244242 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 38.0 2.99e-01 75.6% 61.5%
3250024 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 40.0 3.34e-01 83.3% 73.3%
3399577 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 39.0 3.24e-01 83.3% 66.4%
3469779 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 39.0 3.15e-01 83.3% 60.9%
D2 medium residues 178-200_270-366
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 4.34e-01 82.5% 89.3%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 45.0 4.19e-01 80.8% 86.8%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 31.0 4.02e-01 84.2% 98.4%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 41.0 4.09e-01 75.0% 96.1%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 45.0 4.08e-01 82.5% 95.6%
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 43.0 3.96e-01 80.8% 87.6%
4uurA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 43.0 4.28e-01 81.7% 95.2%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.56 46.0 4.62e-01 99.2% 87.8%
1h97A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 42.0 3.98e-01 81.7% 95.2%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.54 35.0 3.22e-01 85.8% 49.4%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.54 42.0 3.87e-01 82.5% 73.8%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 41.0 3.93e-01 80.0% 91.5%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 41.0 3.83e-01 80.0% 84.6%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 3.63e-01 89.2% 77.3%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 47.0 2.91e-01 99.2% 41.8%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 40.0 4.12e-01 76.7% 87.5%
2y8nA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 47.0 2.86e-01 100.0% 42.2%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.52 32.0 3.30e-01 91.7% 64.0%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 40.0 3.80e-01 80.8% 93.9%
3c02A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.52 44.0 3.56e-01 94.2% 88.0%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 3.80e-01 71.7% 81.1%
1ow4A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 39.0 3.98e-01 83.3% 82.5%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 39.0 3.76e-01 80.8% 75.2%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 39.0 3.66e-01 81.7% 94.6%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 36.0 3.68e-01 84.2% 74.2%
1oshA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 35.0 2.93e-01 71.7% 41.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075237 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.64 31.0 3.58e-01 76.7% 62.4%
3542152 397.7.1.7 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP 0.62 38.0 4.30e-01 80.8% 81.1%
3513473 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 40.0 3.73e-01 88.3% 52.0%
3703396 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 42.0 3.39e-01 88.3% 37.8%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.60 37.0 4.21e-01 80.8% 82.2%
4997464 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 41.0 3.28e-01 75.8% 77.1%
3198235 109.4.1.307 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 0.55 42.0 3.29e-01 83.3% 65.8%
3493501 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 39.0 3.26e-01 73.3% 55.6%
4011264 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 4.27e-01 90.8% 87.1%
3790998 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 3.33e-01 81.7% 63.9%
3166518 109.4.1.307 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 0.53 44.0 2.97e-01 92.5% 69.9%
3461200 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 37.0 3.40e-01 73.3% 77.3%
2530252 2500.1.1.3 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like 0.52 45.0 2.86e-01 99.2% 46.0%
4970544 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 2.98e-01 93.3% 61.3%
4623814 131.1.1.15 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III 0.50 38.0 3.29e-01 80.8% 85.6%
D3 medium residues 201-269
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ikwA02 3.10.540.20 Alpha Beta › Roll › duf1285 like fold › 0.60 39.0 3.88e-01 100.0% 64.3%