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pol

Euk-Vir

Baboon_adenovirus_3

pol__YP_007905999__Baboon_adenovirus_3__1298385

Identity

Accession:
YP_007905999 ↗
Protein ID:
pol
Kingdom:
euk

Quality

72.5 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Baboon_adenovirus_3

TaxID: 1298385

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 252-493
PDB
Domain cluster: rep: DNA_polymerase__YP_004191813__Fowl_aviadenovirus_E__190065__D141-375
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03175.19 best DNA_pol_B_2 47.1 2.40e-12 25.6% 14.1%
D2 medium residues 83-165_194-228
PDB
Domain cluster: rep: DNA_polymerase__YP_009246380__Bat_mastadenovirus_WIV10__1788432__D69-178
D3 medium residues 972-1048
PDB
Domain cluster: rep: DNA_polymerase__YP_009246380__Bat_mastadenovirus_WIV10__1788432__D966-1028
D4 medium residues 1049-1103
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 40.0 4.32e-01 72.7% 76.1%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.63 38.0 3.67e-01 70.9% 53.2%
1vq8300 3.10.450.80 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.56e-01 74.5% 80.4%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.58 39.0 4.10e-01 70.9% 88.0%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.39e-01 81.8% 44.2%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.20e-01 74.5% 46.6%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 41.0 3.52e-01 80.0% 52.1%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.56 41.0 3.16e-01 80.0% 90.6%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 43.0 3.93e-01 87.3% 68.8%
1y00A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.55 36.0 3.54e-01 70.9% 60.7%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 3.51e-01 89.1% 58.4%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 39.0 2.59e-01 90.9% 39.1%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 37.0 3.20e-01 78.2% 80.4%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 40.0 2.56e-01 89.1% 24.3%
3rq0A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.78e-01 92.7% 57.0%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 39.0 3.17e-01 94.5% 63.4%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 38.0 2.33e-01 83.6% 19.0%
6f7bA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 41.0 2.68e-01 96.4% 53.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4076295 375.1.1.88 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.66 47.0 4.80e-01 76.4% 78.2%
3815797 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.64 50.0 3.76e-01 89.1% 56.0%
4121883 4313.1.1.1 ↗ beta duplicates or obligate multimers › CsrA-like › CsrA-like › CsrA-like › CsrA 0.60 40.0 3.61e-01 74.5% 50.7%
3966297 4313.1.1.0 ↗ beta duplicates or obligate multimers › CsrA-like › CsrA-like › CsrA-like 0.59 39.0 3.88e-01 74.5% 63.3%
3622446 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 42.0 3.92e-01 78.2% 88.6%
3205306 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.58 45.0 2.84e-01 89.1% 27.3%
3934802 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.57 43.0 3.79e-01 90.9% 76.8%
2323929 375.1.1.43 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Acetone_carb_G 0.56 39.0 2.88e-01 74.5% 40.1%
3264545 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.55 45.0 2.77e-01 94.5% 39.0%
5056342 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 39.0 2.87e-01 76.4% 30.0%
3911194 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 40.0 3.54e-01 78.2% 81.2%
3996720 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 38.0 3.58e-01 76.4% 87.1%
3874262 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 39.0 3.13e-01 78.2% 73.6%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.54 38.0 2.81e-01 76.4% 29.0%
5040847 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 38.0 2.50e-01 80.0% 29.5%
4846313 1075.1.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › LptF_LptG 0.53 38.0 3.37e-01 80.0% 59.6%
3617714 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 39.0 3.54e-01 80.0% 86.7%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 38.0 3.43e-01 78.2% 79.7%
5054257 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.66e-01 90.9% 67.1%
3877833 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 37.0 3.31e-01 78.2% 87.5%