pol_protein,_partial

Euk-Vir

Simian_retrovirus_4

pol_protein,_partial__YP_003864102__Simian_retrovirus_4__723802

Identity

84.4 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Betaretrovirus› Simian_retrovirus_4

TaxID: 723802

View cluster (9 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 451-582

PDB

Domain cluster: rep: SRR1747046_scaffold_29_prodigal-single.1__X__X__00050__D37-139

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00075.31 best	RNase_H	68.1	1.40e-18	95.5%	94.3%

D2 high residues 588-627

PDB

Domain cluster: rep: pol_protein,_partial__YP_009305201__Simian_retrovirus_8__1904439__D588-627

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02022.26 best	Integrase_Zn	49.0	6.70e-13	80.0%	84.2%

D3 high residues 652-799

PDB

Domain cluster: rep: AB916497.1__BAS32805.1__X__00007__D17-171

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00665.33 best	rve	83.8	1.20e-23	61.5%	94.1%

D4 high residues 806-857

PDB

Domain cluster: rep: pol_protein,_partial__YP_009305201__Simian_retrovirus_8__1904439__D806-857

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00552.28 best	IN_DBD_C	73.9	6.60e-21	86.5%	95.6%

D5 medium residues 14-98_122-163

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	30.9	3.40e-07	34.6%	24.0%

D6 medium residues 335-445

PDB

Domain cluster: rep: putative_viral_DNA_polymerase__YP_009243641__Bovine_retrovirus_CH15__1822365__D319-332_351-432

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF27608.1 best	RNaseH_ERVK-8	130.7	2.50e-38	86.5%	97.9%