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pol_protein,_partial

Euk-Vir

Simian_retrovirus_8

pol_protein,_partial__YP_009305201__Simian_retrovirus_8__1904439

Identity

Accession:
YP_009305201 ↗
Protein ID:
pol_protein,_partial
Kingdom:
euk

Quality

84.1 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Betaretrovirus› Simian_retrovirus_8

TaxID: 1904439

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 451-582
PDB
Domain cluster: rep: SRR1747046_scaffold_29_prodigal-single.1__X__X__00050__D37-139
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00075.31 best RNase_H 66.3 4.60e-18 95.5% 93.6%
D2 high residues 588-627
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02022.26 best Integrase_Zn 45.1 1.20e-11 80.0% 84.2%
CATH (85)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.99 84.0 8.39e-01 90.0% 87.8%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.97 89.0 8.40e-01 97.5% 84.8%
7u32G01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.91 76.0 6.77e-01 92.5% 66.1%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 64.0 6.30e-01 100.0% 88.6%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.75 56.0 5.64e-01 82.5% 95.1%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 59.0 5.50e-01 100.0% 70.4%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.74 59.0 4.59e-01 100.0% 41.6%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 61.0 4.71e-01 97.5% 45.7%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 57.0 5.45e-01 97.5% 74.5%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 57.0 5.35e-01 100.0% 70.9%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 57.0 3.57e-01 97.5% 16.4%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.32e-01 100.0% 78.0%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 59.0 4.45e-01 97.5% 64.2%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.30e-01 95.0% 75.9%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 47.0 3.59e-01 72.5% 27.5%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 4.97e-01 95.0% 63.5%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.70 54.0 3.79e-01 90.0% 25.5%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 52.0 5.14e-01 100.0% 80.0%
3cdlA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 55.0 5.08e-01 92.5% 92.6%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 56.0 5.17e-01 100.0% 73.2%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.15e-01 95.0% 82.0%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.93e-01 97.5% 74.6%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.31e-01 95.0% 41.5%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 4.94e-01 95.0% 74.5%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.65e-01 95.0% 65.2%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.11e-01 100.0% 79.6%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.67 55.0 4.52e-01 95.0% 56.6%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 4.64e-01 97.5% 65.3%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.64e-01 97.5% 58.3%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.51e-01 95.0% 51.3%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 4.87e-01 100.0% 73.8%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 3.90e-01 82.5% 41.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 3.70e-01 95.0% 44.7%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.48e-01 95.0% 66.2%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 52.0 5.25e-01 97.5% 95.1%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.65e-01 97.5% 64.2%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.66 53.0 3.86e-01 97.5% 31.0%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.02e-01 100.0% 37.1%
1fadA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 45.0 3.45e-01 72.5% 61.1%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.15e-01 95.0% 63.4%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.64e-01 95.0% 60.9%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.55e-01 95.0% 70.1%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.61e-01 100.0% 89.4%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.36e-01 95.0% 48.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.31e-01 95.0% 57.5%
3c07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 54.0 3.47e-01 100.0% 24.3%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 3.57e-01 95.0% 44.4%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.50e-01 95.0% 61.5%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.69e-01 100.0% 98.4%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.59e-01 95.0% 65.6%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.24e-01 95.0% 50.0%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.64 49.0 4.50e-01 90.0% 67.9%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.58e-01 100.0% 100.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 3.54e-01 95.0% 29.7%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 3.50e-01 95.0% 48.7%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 48.0 3.91e-01 95.0% 42.6%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 3.99e-01 95.0% 48.9%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 50.0 3.74e-01 92.5% 35.8%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 46.0 3.89e-01 85.0% 47.4%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 3.49e-01 100.0% 35.3%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 46.0 4.06e-01 85.0% 55.4%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 47.0 3.75e-01 95.0% 43.7%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 49.0 4.76e-01 95.0% 79.2%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 44.0 3.86e-01 77.5% 55.6%
1qb2A00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.62 49.0 3.81e-01 97.5% 51.9%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 50.0 4.79e-01 100.0% 98.0%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 3.53e-01 100.0% 37.1%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 47.0 4.59e-01 92.5% 95.7%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 46.0 3.61e-01 87.5% 39.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.26e-01 95.0% 74.6%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 41.0 3.47e-01 70.0% 37.8%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 47.0 4.63e-01 97.5% 97.9%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 3.54e-01 100.0% 43.6%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.03e-01 95.0% 62.7%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 50.0 4.26e-01 97.5% 65.7%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 47.0 4.38e-01 100.0% 73.3%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.60 47.0 3.44e-01 95.0% 37.4%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 46.0 3.88e-01 100.0% 45.9%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.13e-01 95.0% 62.5%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 40.0 3.49e-01 70.0% 45.5%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 41.0 3.52e-01 77.5% 49.3%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 46.0 3.05e-01 100.0% 98.0%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.08e-01 97.5% 84.2%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.53e-01 100.0% 68.2%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 39.0 3.89e-01 95.0% 80.9%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4919061 101.1.1.14 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.98 87.0 8.36e-01 100.0% 86.4%
1738401 101.1.1.14 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.97 82.0 8.12e-01 90.0% 87.8%
4874560 101.1.1.14 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.96 88.0 7.97e-01 97.5% 76.5%
1149746 101.1.1.14 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.96 85.0 7.94e-01 100.0% 79.2%
3971636 101.28.1.0 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.85 72.0 7.23e-01 100.0% 97.5%
3793393 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 67.0 5.45e-01 100.0% 48.8%
3998880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 68.0 5.20e-01 100.0% 41.1%
3620215 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.80 67.0 4.27e-01 100.0% 20.5%
3503708 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.80 67.0 5.77e-01 100.0% 60.0%
3410592 101.1.8.25 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › HTH_psq 0.79 66.0 6.04e-01 100.0% 70.9%
3620216 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 5.12e-01 100.0% 45.9%
3800176 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 65.0 5.14e-01 100.0% 45.9%
5027752 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 66.0 5.31e-01 100.0% 50.0%
3793383 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 65.0 5.60e-01 100.0% 60.0%
3239905 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.78 65.0 5.14e-01 100.0% 45.9%
3567273 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.77 63.0 6.15e-01 100.0% 86.7%
3926525 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.76 63.0 6.38e-01 100.0% 100.0%
3404418 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.76 65.0 5.51e-01 100.0% 57.1%
3272419 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 5.97e-01 97.5% 78.0%
3907370 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.76 64.0 3.83e-01 100.0% 79.0%
3908710 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 65.0 4.97e-01 100.0% 45.3%
3908686 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 4.83e-01 100.0% 41.0%
3877765 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.75 63.0 6.37e-01 100.0% 100.0%
3398365 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 61.0 3.81e-01 95.0% 77.0%
4495608 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 63.0 5.94e-01 100.0% 80.0%
3180778 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.74 62.0 5.41e-01 100.0% 63.1%
4456463 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.74 59.0 4.18e-01 92.5% 30.0%
4009872 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.74 61.0 5.48e-01 97.5% 65.0%
3919175 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.74 62.0 4.62e-01 100.0% 39.1%
3444766 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.74 63.0 4.85e-01 100.0% 45.3%
5060990 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.74 60.0 3.65e-01 97.5% 15.0%
3907483 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 4.61e-01 100.0% 36.4%
4556247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 61.0 3.81e-01 100.0% 77.2%
4460997 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.73 56.0 5.51e-01 92.5% 80.0%
3590753 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 61.0 5.79e-01 100.0% 80.0%
3943148 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.73 60.0 5.68e-01 97.5% 80.0%
3283500 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.73 57.0 5.46e-01 92.5% 76.0%
5013438 101.1.2.881 ↗ alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.73 61.0 5.42e-01 100.0% 65.0%
4391758 101.1.6.1 ↗ alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.73 58.0 4.64e-01 100.0% 44.2%
3892817 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.73 62.0 4.86e-01 100.0% 47.8%
3883738 101.1.3.20 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_4 0.73 62.0 4.86e-01 100.0% 47.8%
3887530 101.1.10.41 ↗ alpha arrays › HTH › HTH › Cyclin-like › HTH_Tnp_4 0.73 62.0 4.86e-01 100.0% 47.8%
3455559 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 4.77e-01 100.0% 45.3%
4604979 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.73 62.0 4.64e-01 100.0% 40.4%
4094272 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.73 59.0 5.51e-01 100.0% 94.5%
4944661 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 60.0 5.56e-01 100.0% 76.4%
3882839 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.72 61.0 4.44e-01 100.0% 35.8%
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.72 60.0 4.88e-01 97.5% 56.2%
3953011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 59.0 5.49e-01 100.0% 72.7%
5077769 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.72 60.0 5.68e-01 100.0% 82.0%
3448782 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.72 61.0 4.64e-01 100.0% 86.0%
3989075 101.1.3.11 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 0.72 57.0 5.76e-01 97.5% 100.0%
4142269 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.72 59.0 5.45e-01 100.0% 92.7%
4165809 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.71 59.0 4.77e-01 100.0% 49.4%
3815501 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.71 59.0 4.60e-01 100.0% 45.3%
3913655 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 59.0 4.88e-01 100.0% 53.8%
4944760 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 5.27e-01 100.0% 71.7%
4458965 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.71 58.0 4.75e-01 97.5% 48.8%
4943227 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.71 56.0 5.46e-01 100.0% 84.4%
3873677 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.71 59.0 5.06e-01 100.0% 60.0%
4197050 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.70 59.0 4.46e-01 100.0% 40.0%
3452698 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.70 59.0 4.59e-01 100.0% 89.5%
4293871 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.70 57.0 5.32e-01 100.0% 72.7%
3985633 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 58.0 5.34e-01 100.0% 72.7%
5045749 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.70 57.0 5.07e-01 100.0% 64.6%
3983783 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 57.0 4.52e-01 100.0% 45.3%
3502247 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.70 56.0 5.13e-01 100.0% 66.7%
5034899 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.70 56.0 3.61e-01 97.5% 19.1%
4533441 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.70 57.0 4.49e-01 100.0% 44.2%
3879118 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.70 57.0 5.29e-01 100.0% 76.4%
4054648 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.26e-01 100.0% 80.0%
5051680 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.69 55.0 4.59e-01 100.0% 48.8%
5070906 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.15e-01 100.0% 66.7%
3786618 101.1.1.201 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.69 55.0 4.09e-01 100.0% 34.7%
4280807 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.69 54.0 5.12e-01 100.0% 72.7%
3589359 101.1.1.68 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.68 56.0 5.61e-01 100.0% 100.0%
5074942 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.68 55.0 4.69e-01 100.0% 53.3%
3834548 101.1.3.12 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.68 55.0 4.88e-01 100.0% 66.2%
4945289 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 4.95e-01 100.0% 71.7%
3670113 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.68 56.0 4.49e-01 100.0% 47.8%
3376425 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.67 56.0 4.54e-01 100.0% 49.4%
4627768 101.1.2.786 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_1 0.67 51.0 5.10e-01 85.0% 100.0%
3563540 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.67 53.0 5.19e-01 97.5% 86.7%
3284292 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.67 52.0 4.21e-01 95.0% 44.4%
3483301 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.67 54.0 3.79e-01 100.0% 27.3%
3959929 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.66 52.0 4.33e-01 95.0% 50.0%
3587739 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.66 53.0 4.54e-01 95.0% 71.4%
3969325 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.66 52.0 4.50e-01 95.0% 57.1%
4863786 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.66 54.0 5.01e-01 100.0% 76.4%
3701286 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 53.0 5.04e-01 97.5% 82.0%
3706139 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 5.03e-01 97.5% 82.0%
3961604 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.65 53.0 4.14e-01 100.0% 90.0%
3967091 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.65 52.0 4.76e-01 100.0% 71.7%
4008322 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.65 53.0 4.91e-01 100.0% 76.4%
3586837 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.65 52.0 4.99e-01 100.0% 80.0%
3256356 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.53e-01 95.0% 62.5%
3588243 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.54 42.0 3.87e-01 95.0% 70.0%
D3 high residues 652-801
PDB
Domain cluster: rep: AB916497.1__BAS32805.1__X__00007__D17-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00665.33 best rve 83.0 2.30e-23 60.7% 94.1%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.98 89.0 8.90e-01 100.0% 91.4%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.95 91.0 9.18e-01 100.0% 99.3%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.92 84.0 8.38e-01 100.0% 92.1%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.92 81.0 8.31e-01 100.0% 94.4%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.90 84.0 8.11e-01 95.3% 90.7%
2x6nD00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.87 76.0 7.13e-01 100.0% 77.0%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.85 80.0 7.81e-01 98.7% 100.0%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 70.0 6.02e-01 94.0% 75.9%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 66.0 6.10e-01 98.0% 72.1%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.74 68.0 6.15e-01 98.0% 73.5%
3p5jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 53.0 4.88e-01 79.3% 88.9%
4py5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 53.0 4.83e-01 82.0% 94.9%
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 47.0 5.04e-01 72.7% 89.3%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.60 43.0 4.02e-01 74.0% 60.3%
4o1gA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 41.0 3.23e-01 70.7% 91.6%
3tw6C01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 41.0 2.91e-01 72.7% 82.7%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 47.0 4.05e-01 90.0% 67.4%
1j6uA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 31.0 3.92e-01 70.0% 100.0%
2vyoA00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.53 42.0 3.82e-01 85.3% 91.3%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 42.0 3.50e-01 87.3% 96.4%
2f8lA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 3.44e-01 82.0% 94.2%
2o8bB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.51 46.0 4.32e-01 98.0% 89.8%
2qjtB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 38.0 3.54e-01 78.7% 88.3%
1ynpB01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.50 45.0 3.66e-01 99.3% 94.1%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3531857 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.98 96.0 8.97e-01 100.0% 86.3%
3939083 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.97 88.0 8.31e-01 100.0% 81.2%
3937782 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.97 84.0 8.05e-01 100.0% 80.0%
3935131 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.96 89.0 8.56e-01 100.0% 86.1%
3924869 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.96 88.0 8.33e-01 100.0% 82.4%
3925663 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.96 87.0 8.19e-01 100.0% 80.0%
3937850 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.96 87.0 8.27e-01 100.0% 82.4%
3924148 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.95 86.0 8.24e-01 100.0% 83.6%
3930504 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.95 87.0 8.33e-01 100.0% 84.8%
2771818 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.94 86.0 8.13e-01 100.0% 82.4%
3930363 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.94 89.0 7.60e-01 100.0% 66.8%
3939670 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.93 85.0 7.98e-01 100.0% 80.6%
3216765 2484.1.1.297 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3, PF29688 0.93 86.0 7.97e-01 100.0% 79.4%
3939024 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.93 89.0 7.63e-01 100.0% 67.7%
428031 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.92 81.0 8.55e-01 92.0% 98.5%
3928301 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.92 84.0 8.03e-01 100.0% 83.5%
3936886 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.92 85.0 8.40e-01 100.0% 92.3%
4150748 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.92 84.0 8.22e-01 100.0% 88.7%
185388 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.92 87.0 7.62e-01 100.0% 71.6%
3926535 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.92 68.0 7.44e-01 75.3% 92.0%
3933447 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.92 63.0 7.59e-01 72.0% 100.0%
3924554 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.92 88.0 7.47e-01 100.0% 67.3%
4339297 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.91 84.0 7.56e-01 100.0% 73.3%
3926139 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.91 88.0 7.53e-01 100.0% 69.1%
3480819 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.91 84.0 8.12e-01 100.0% 87.3%
4517192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.91 84.0 7.64e-01 100.0% 75.8%
3925598 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.91 88.0 8.22e-01 100.0% 85.7%
3936325 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.91 87.0 7.41e-01 100.0% 69.8%
3933107 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.90 78.0 8.13e-01 89.3% 96.4%
3935879 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.90 86.0 7.72e-01 100.0% 75.9%
3934189 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.90 86.0 7.39e-01 100.0% 68.8%
3939156 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.90 85.0 7.66e-01 100.0% 75.9%
3420098 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.90 87.0 7.47e-01 100.0% 69.8%
3940128 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.90 84.0 7.50e-01 100.0% 74.4%
3933413 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 86.0 8.05e-01 100.0% 85.7%
3926191 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 7.31e-01 100.0% 67.7%
3963648 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.89 86.0 7.29e-01 100.0% 85.3%
3923747 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 7.33e-01 100.0% 68.8%
3424158 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 86.0 7.11e-01 100.0% 63.3%
3924707 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 78.0 7.92e-01 94.7% 91.9%
3931350 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 7.37e-01 100.0% 69.8%
3737623 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 7.27e-01 100.0% 67.7%
3249604 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 7.31e-01 100.0% 70.9%
3504836 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 79.0 7.00e-01 100.0% 69.0%
3252840 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 7.01e-01 100.0% 69.0%
3460608 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 7.30e-01 100.0% 68.2%
3273271 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.89 85.0 8.12e-01 100.0% 89.4%
3175241 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 85.0 7.89e-01 100.0% 87.2%
3520727 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 85.0 7.26e-01 100.0% 67.7%
3888097 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 85.0 6.63e-01 100.0% 53.2%
3170687 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 85.0 7.89e-01 100.0% 87.2%
3934129 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.88 85.0 7.49e-01 100.0% 73.2%
None — 0.88 85.0 8.08e-01 100.0% 91.8%
3783161 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 82.0 7.14e-01 100.0% 67.9%
3210952 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.88 81.0 7.99e-01 95.3% 91.6%
3926417 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 85.0 8.28e-01 100.0% 96.2%
3970062 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.88 85.0 7.78e-01 100.0% 81.6%
4928272 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 84.0 8.38e-01 99.3% 98.7%
4336164 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.88 84.0 7.84e-01 100.0% 83.9%
4291495 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 84.0 7.91e-01 100.0% 90.3%
3274129 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.88 84.0 7.34e-01 100.0% 74.3%
3177640 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 84.0 7.14e-01 100.0% 66.7%
3928988 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 84.0 7.14e-01 100.0% 66.7%
3932223 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 83.0 7.15e-01 100.0% 67.7%
3955433 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 83.0 7.76e-01 100.0% 88.9%
3927688 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 84.0 8.06e-01 100.0% 90.9%
3462514 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 84.0 7.76e-01 100.0% 86.7%
3927185 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 82.0 7.15e-01 100.0% 70.0%
3257564 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 82.0 7.29e-01 100.0% 73.5%
3927798 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 83.0 7.13e-01 100.0% 69.1%
3252345 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 83.0 7.04e-01 100.0% 66.2%
3520429 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 83.0 7.82e-01 100.0% 88.6%
3969957 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.87 83.0 7.57e-01 100.0% 79.5%
3672736 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 83.0 7.80e-01 100.0% 89.1%
3588441 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.87 83.0 8.02e-01 100.0% 93.3%
3684741 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.86 83.0 7.24e-01 100.0% 72.9%
3903903 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.86 82.0 7.42e-01 100.0% 78.4%
4099374 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.85 82.0 7.69e-01 100.0% 88.0%
3971375 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.85 82.0 7.47e-01 100.0% 81.4%
3937267 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.85 79.0 7.11e-01 100.0% 74.4%
3588285 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.85 81.0 7.21e-01 100.0% 81.0%
3588051 2484.1.1.202 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.84 80.0 7.49e-01 100.0% 83.3%
3253769 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 74.0 6.64e-01 100.0% 71.3%
4032751 2484.1.1.117 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.82 76.0 7.67e-01 100.0% 96.7%
3956973 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.82 79.0 6.66e-01 100.0% 74.8%
5084008 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.82 78.0 7.30e-01 100.0% 85.0%
5061488 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.82 77.0 7.41e-01 100.0% 88.5%
3239102 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 75.0 7.29e-01 100.0% 87.9%
3956257 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.82 75.0 6.70e-01 100.0% 72.4%
3590610 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 75.0 6.95e-01 100.0% 78.4%
3565215 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 76.0 7.22e-01 100.0% 85.1%
3588659 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.81 75.0 6.79e-01 100.0% 74.7%
3589031 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.79 71.0 6.68e-01 96.7% 80.6%
3905030 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 74.0 6.67e-01 100.0% 76.4%
3564521 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.78 72.0 6.38e-01 100.0% 70.0%
3856885 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.78 72.0 6.38e-01 100.0% 71.7%
3878938 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 71.0 6.62e-01 100.0% 80.0%
3928405 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 47.0 5.62e-01 87.3% 95.2%
3926267 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 62.0 6.05e-01 98.0% 88.7%
D4 high residues 806-857
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00552.28 best IN_DBD_C 73.7 7.90e-21 86.5% 95.6%
CATH (83)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.88 73.0 7.44e-01 90.4% 98.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 75.0 7.01e-01 98.1% 79.4%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 73.0 5.72e-01 96.2% 47.1%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 73.0 6.53e-01 100.0% 70.4%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 72.0 7.32e-01 98.1% 98.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 69.0 7.04e-01 96.2% 94.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 75.0 5.69e-01 100.0% 59.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 71.0 6.97e-01 98.1% 89.3%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 72.0 6.40e-01 98.1% 69.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 72.0 6.63e-01 96.2% 76.9%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 66.0 6.78e-01 90.4% 98.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 68.0 6.12e-01 98.1% 67.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 68.0 6.38e-01 98.1% 76.6%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 72.0 6.94e-01 100.0% 93.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 70.0 6.86e-01 98.1% 93.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 6.15e-01 98.1% 86.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 62.0 6.49e-01 86.5% 100.0%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.79 73.0 6.95e-01 100.0% 88.1%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 66.0 6.69e-01 94.2% 98.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 69.0 5.37e-01 98.1% 56.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 63.0 6.31e-01 92.3% 88.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 67.0 5.83e-01 98.1% 75.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 65.0 6.37e-01 94.2% 87.5%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 6.42e-01 92.3% 96.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 59.0 6.24e-01 86.5% 93.5%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 64.0 6.13e-01 92.3% 96.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 63.0 6.11e-01 92.3% 94.9%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 62.0 6.03e-01 90.4% 98.3%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 5.81e-01 98.1% 71.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 65.0 6.34e-01 98.1% 88.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 62.0 5.48e-01 92.3% 70.9%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 6.00e-01 92.3% 91.9%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.55e-01 98.1% 61.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 62.0 5.85e-01 92.3% 87.5%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 5.76e-01 94.2% 82.9%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 5.84e-01 90.4% 98.2%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 5.86e-01 98.1% 79.4%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 6.11e-01 100.0% 98.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 61.0 5.89e-01 92.3% 96.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 61.0 5.46e-01 94.2% 78.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 5.84e-01 92.3% 98.3%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 5.00e-01 100.0% 54.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 59.0 5.51e-01 92.3% 88.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 59.0 5.20e-01 90.4% 79.2%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 63.0 5.17e-01 98.1% 58.3%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.73 64.0 6.36e-01 100.0% 96.3%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 5.03e-01 98.1% 51.0%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.72 58.0 5.67e-01 94.2% 80.7%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.57e-01 88.5% 100.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.89e-01 98.1% 86.7%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 4.66e-01 100.0% 44.1%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.71 62.0 4.30e-01 100.0% 34.5%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 49.0 4.58e-01 73.1% 96.9%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 56.0 5.01e-01 92.3% 82.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 5.87e-01 100.0% 85.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 57.0 5.21e-01 92.3% 88.6%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.88e-01 100.0% 94.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 4.75e-01 98.1% 83.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 4.57e-01 100.0% 49.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 57.0 5.53e-01 100.0% 90.0%
2bh8B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 47.0 4.61e-01 73.1% 96.4%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.66 53.0 4.15e-01 92.3% 88.4%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.48e-01 98.1% 96.2%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.66 53.0 4.93e-01 90.4% 77.3%
3nwpA00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 46.0 3.02e-01 75.0% 75.1%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 54.0 4.30e-01 98.1% 86.6%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 48.0 4.76e-01 82.7% 83.6%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 54.0 4.13e-01 100.0% 40.8%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 3.68e-01 96.2% 68.2%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 3.35e-01 94.2% 72.5%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 52.0 3.98e-01 100.0% 96.7%
6l6jA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 3.83e-01 98.1% 94.1%
4c26A00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.59 42.0 3.94e-01 76.9% 68.2%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.58 46.0 3.89e-01 100.0% 93.6%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.58 44.0 2.71e-01 84.6% 23.9%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 42.0 2.45e-01 88.5% 8.2%
3kd9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.25e-01 88.5% 46.1%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.77e-01 100.0% 97.0%
6j19A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.82e-01 88.5% 87.0%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.55 47.0 2.82e-01 98.1% 37.5%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.54 39.0 3.68e-01 78.8% 65.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.60e-01 92.3% 98.9%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.51 43.0 3.57e-01 100.0% 75.2%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2893010 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.95 81.0 7.99e-01 90.4% 87.0%
3541241 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.89 81.0 7.66e-01 100.0% 85.0%
540 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.89 72.0 7.45e-01 90.4% 93.8%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 77.0 6.40e-01 98.1% 57.6%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 77.0 7.55e-01 98.1% 89.1%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 77.0 6.30e-01 98.1% 55.6%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.87 76.0 7.21e-01 98.1% 83.3%
3840679 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 76.0 6.10e-01 98.1% 52.6%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 76.0 6.20e-01 98.1% 55.6%
2063314 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.86 78.0 7.03e-01 100.0% 79.7%
3486328 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 74.0 7.10e-01 100.0% 83.3%
3518844 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.85 73.0 6.16e-01 98.1% 57.6%
3795121 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.85 69.0 6.42e-01 92.3% 70.8%
2060211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 77.0 6.61e-01 100.0% 70.9%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.85 74.0 6.10e-01 98.1% 55.6%
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 74.0 5.16e-01 100.0% 32.3%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 76.0 6.51e-01 98.1% 66.3%
3302817 4.1.1.362 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 0.84 71.0 5.50e-01 96.2% 44.0%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.84 73.0 6.31e-01 98.1% 62.5%
3768094 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.84 72.0 5.66e-01 98.1% 46.7%
3877485 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.84 71.0 5.97e-01 98.1% 56.5%
4660107 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.84 72.0 6.86e-01 98.1% 81.7%
164934 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.84 73.0 6.53e-01 100.0% 70.4%
3651961 4.1.1.251 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.84 70.0 6.93e-01 96.2% 87.3%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.84 73.0 6.55e-01 98.1% 71.0%
3562168 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.84 71.0 5.89e-01 98.1% 54.4%
4357819 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.83 72.0 6.52e-01 100.0% 71.4%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 72.0 5.98e-01 98.1% 55.6%
3879064 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 72.0 5.90e-01 98.1% 54.4%
3707634 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 75.0 7.39e-01 98.1% 92.7%
4883808 148.1.3.202 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › KOW5_SPT5 0.83 72.0 7.24e-01 100.0% 96.2%
3218198 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 70.0 6.93e-01 98.1% 89.1%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.83 71.0 6.38e-01 98.1% 70.0%
3721794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 70.0 6.67e-01 94.2% 80.0%
3389177 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 71.0 5.71e-01 98.1% 50.0%
3883165 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 73.0 5.85e-01 98.1% 51.0%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 74.0 6.62e-01 98.1% 78.6%
4098445 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.82 70.0 6.70e-01 98.1% 81.7%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 72.0 6.38e-01 98.1% 68.0%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 71.0 5.86e-01 98.1% 55.6%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 70.0 6.94e-01 98.1% 90.9%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.82 70.0 4.83e-01 98.1% 29.7%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 71.0 6.77e-01 98.1% 83.3%
3562174 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 72.0 5.76e-01 98.1% 51.0%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 68.0 6.77e-01 98.1% 89.1%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 70.0 5.56e-01 96.2% 49.0%
3622846 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 66.0 6.78e-01 94.2% 94.0%
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 70.0 6.34e-01 98.1% 71.4%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 68.0 6.93e-01 92.3% 96.0%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 72.0 6.18e-01 98.1% 63.7%
3231263 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 68.0 6.91e-01 96.2% 98.0%
3407854 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 69.0 5.64e-01 98.1% 52.6%
4863023 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.80 67.0 6.88e-01 96.2% 100.0%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.80 70.0 5.38e-01 98.1% 44.3%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 71.0 6.10e-01 98.1% 75.0%
3547102 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 70.0 5.93e-01 98.1% 60.0%
3317400 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 71.0 5.11e-01 98.1% 37.1%
3356591 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 71.0 5.75e-01 98.1% 54.7%
3620094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 67.0 6.63e-01 98.1% 89.1%
3881124 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 68.0 5.69e-01 98.1% 55.6%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 68.0 5.77e-01 98.1% 58.8%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.80 71.0 6.42e-01 100.0% 74.3%
3169607 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.80 69.0 6.13e-01 100.0% 68.0%
3826746 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.07e-01 98.1% 63.7%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 65.0 6.05e-01 94.2% 72.3%
1140051 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 64.0 6.58e-01 88.5% 98.0%
1114686 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.79 66.0 6.46e-01 94.2% 85.7%
4330934 4.1.1.76 ↗ beta barrels › SH3 › SH3 › SH3 › NdhO 0.79 69.0 6.01e-01 98.1% 82.5%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 67.0 6.30e-01 98.1% 76.9%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 69.0 5.74e-01 98.1% 57.8%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 6.09e-01 98.1% 71.4%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 68.0 6.73e-01 98.1% 92.7%
3407855 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 69.0 5.74e-01 98.1% 56.7%
3881111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 67.0 5.57e-01 98.1% 55.6%
3406803 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 62.0 5.64e-01 88.5% 77.1%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.40e-01 98.1% 85.0%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 64.0 5.47e-01 98.1% 57.6%
3323530 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.77 67.0 6.27e-01 98.1% 90.8%
3999723 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 4.70e-01 98.1% 33.3%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 5.52e-01 98.1% 56.7%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 65.0 4.93e-01 98.1% 41.6%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 60.0 5.93e-01 92.3% 85.2%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.14e-01 100.0% 85.0%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.25e-01 98.1% 60.0%
3584364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.10e-01 94.2% 96.0%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 61.0 4.92e-01 96.2% 61.0%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.72 63.0 5.46e-01 98.1% 75.0%
3795223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.04e-01 94.2% 56.5%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 62.0 5.81e-01 100.0% 80.0%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.30e-01 98.1% 71.2%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.71 61.0 5.70e-01 98.1% 78.5%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 4.63e-01 98.1% 47.8%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.69 59.0 5.32e-01 100.0% 78.7%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 59.0 5.53e-01 100.0% 86.2%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.69e-01 98.1% 89.1%
4404324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 53.0 4.54e-01 86.5% 80.0%
4589595 4.1.1.447 ↗ beta barrels › SH3 › SH3 › SH3 › PF28065 0.67 57.0 5.37e-01 100.0% 84.6%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 3.44e-01 100.0% 15.7%
3890313 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 3.84e-01 100.0% 61.2%
None — 0.58 48.0 3.19e-01 98.1% 47.7%
D5 medium residues 16-101_124-162
PDB
Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143
D6 medium residues 333-445
PDB
Domain cluster: rep: putative_viral_DNA_polymerase__YP_009243641__Bovine_retrovirus_CH15__1822365__D319-332_351-432
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27608.1 best RNaseH_ERVK-8 128.0 1.80e-37 85.0% 97.9%