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pol_protein

Euk-Vir

Central_cimpanzee_simian_foamy_virus

pol_protein__YP_009508546__Central_cimpanzee_simian_foamy_virus__2170194

Identity

Accession:: YP_009508546 ↗
Protein ID:: pol_protein
Kingdom:: euk

Quality

83.1 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-93

PDB

Domain cluster: rep: protease,_partial__YP_009305200__Simian_retrovirus_8__1904439__D173-265

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03539.20 best	Spuma_A9PTase	129.6	1.80e-37	87.9%	49.1%

D2 high residues 626-748

PDB

Domain cluster: rep: MT074142.1__QIG64404.1__DAC23_126__00126__D2-193

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00075.31 best	RNase_H	62.8	5.70e-17	99.2%	77.3%

D3 high residues 761-851

PDB

Domain cluster: rep: pol_protein__YP_009508551__Eastern_chimpanzee_simian_foamy_virus__2170195__D762-831

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17921.8 best	Integrase_H2C2	55.8	5.80e-15	57.1%	88.1%

D4 high residues 856-1021

PDB

Domain cluster: rep: KX077896.1__ANM47701.1__X__00070__D117-246_318-381

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00665.33 best	rve	60.8	1.80e-16	58.4%	99.0%

D5 medium residues 154-229_264-287

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03539.20 best	Spuma_A9PTase	25.0	2.70e-05	23.0%	14.1%

D6 medium residues 358-506

PDB

Domain cluster: rep: pol__YP_009513242__Rhesus_macaque_simian_foamy_virus__2170199__D372-517

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17919.8 best	RT_RNaseH_2	35.6	1.10e-08	53.0%	81.0%

D7 medium residues 507-574

PDB

Domain cluster: rep: pol__YP_009513242__Rhesus_macaque_simian_foamy_virus__2170199__D518-584

D8 medium residues 1067-1143

PDB