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pol_protein

Euk-Vir

Simian_T-lymphotropic_virus_2

pol_protein__YP_567050__Simian_T-lymphotropic_virus_2__33748

Identity

Accession:
YP_567050 ↗
Protein ID:
pol_protein
Kingdom:
euk

Quality

79.4 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Deltaretrovirus› Simian_T-lymphotropic_virus_2

TaxID: 33748

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 441-578
PDB
Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D435-467_490-507_524-584
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00075.31 best RNase_H 41.9 1.60e-10 94.2% 92.9%
D2 high residues 632-791
PDB
Domain cluster: rep: AB916497.1__BAS32805.1__X__00007__D17-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00665.33 best rve 93.2 1.50e-26 60.6% 98.0%
D3 medium residues 1-77_99-140
PDB
Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00078.33 best RVT_1 30.1 6.20e-07 37.0% 24.5%
D4 medium residues 78-98_141-216
PDB
Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00078.33 best RVT_1 60.1 4.00e-16 80.4% 39.0%
D5 medium residues 217-307
PDB
Domain cluster: rep: p66_subunit__NP_705927__Human_immunodeficiency_virus_1__11676__D252-315
D6 medium residues 308-357_373-398
PDB
Domain cluster: rep: p15NC-p14PR-p95RT_IN__NP_955619__Human_T-cell_leukemia_virus_type_I__11908__D551-648