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poly-A-_polymerase_large_subunit
Euk-VirNile_crocodilepox_virus
poly-A-_polymerase_large_subunit__YP_784244__Nile_crocodilepox_virus__1285600
Identity
- Accession:
- YP_784244 ↗
- Protein ID:
- poly-A-_polymerase_large_subunit
- Kingdom:
- euk
Quality
87.5
mean pLDDT
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-105
Domain cluster:
rep: poly-A-_polymerase_catalytic_subunit_VP55__YP_008003861__Adoxophyes_honmai_entomopoxvirus_L__1293540__D11-107
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12630.14 best | Pox_polyA_pol_N | 124.6 | 3.00e-36 | 100.0% | 93.5% |
D2
high
residues 151-306_457-470
Domain cluster:
rep: putative_polyA_polymerase_catalytic_subunit__YP_009173345__Chrysochromulina_ericina_virus__455364__D206-387
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03296.21 best | Pox_polyA_pol | 178.0 | 1.40e-52 | 70.6% | 81.1% |
| PF12629.14 | Pox_polyA_pol_C | 44.9 | 1.90e-11 | 27.7% | 21.2% |
D3
high
residues 327-451
Domain cluster:
rep: polyA_polymerase_large_subunit__YP_005296237__Cotia_virus_SPAn232__930275__D325-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12629.14 best | Pox_polyA_pol_C | 106.5 | 2.50e-30 | 100.0% | 59.6% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wpwA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.60 | 52.0 | 3.86e-01 | 96.8% | 92.6% |
| 4wcwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 42.0 | 4.45e-01 | 87.2% | 82.0% |
| 4wqkA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.59 | 49.0 | 4.45e-01 | 92.8% | 86.3% |
| 8h1kA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 42.0 | 2.91e-01 | 77.6% | 47.0% |
| 1oqcA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 37.0 | 3.90e-01 | 74.4% | 78.6% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.53 | 37.0 | 3.96e-01 | 74.4% | 84.8% |
| 3w5mA05 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 46.0 | 3.38e-01 | 96.8% | 66.2% |
| 1ou5A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 41.0 | 3.99e-01 | 92.0% | 76.4% |
| 4g41A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 41.0 | 3.32e-01 | 84.8% | 75.0% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.51 | 29.0 | 3.58e-01 | 86.4% | 88.6% |
| 3p8aA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 39.0 | 3.65e-01 | 81.6% | 86.3% |
| 1r89A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 40.0 | 4.02e-01 | 90.4% | 82.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1179386 | 4945.1.1.1 ↗ | a+b complex topology › C-terminal a+b domain in Poly(A) polymerase catalytic subunit › C-terminal a+b domain in Poly(A) polymerase catalytic subunit › C-terminal a+b domain in Poly(A) polymerase catalytic subunit › Pox_polyA_pol_C | 0.92 | 88.0 | 7.65e-01 | 100.0% | 70.5% |
| 4283597 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.64 | 33.0 | 4.36e-01 | 78.4% | 100.0% |
| 3345939 | 601.21.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr | 0.61 | 38.0 | 3.89e-01 | 90.4% | 64.2% |
| 3379703 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.59 | 32.0 | 4.12e-01 | 88.8% | 98.5% |
| 3874033 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 34.0 | 3.83e-01 | 84.0% | 73.0% |
| 1160872 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.56 | 32.0 | 3.99e-01 | 86.4% | 98.6% |
| 4146108 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.55 | 41.0 | 4.22e-01 | 88.8% | 84.3% |
| 3172977 | 601.21.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr | 0.53 | 36.0 | 3.64e-01 | 74.4% | 68.5% |
| 3240980 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 45.0 | 3.36e-01 | 96.0% | 40.7% |
| 3685 | 4266.2.1.1 ↗ | alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 | 0.52 | 32.0 | 3.64e-01 | 94.4% | 81.9% |
| 3960020 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.51 | 43.0 | 3.97e-01 | 92.0% | 77.6% |
| 3950526 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.51 | 43.0 | 3.99e-01 | 92.0% | 80.0% |
| 3839787 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.51 | 43.0 | 4.12e-01 | 92.8% | 85.5% |
| 5057633 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.51 | 30.0 | 3.13e-01 | 92.8% | 61.7% |
| 5000427 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.50 | 37.0 | 2.72e-01 | 76.0% | 80.3% |
| 4495995 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.50 | 43.0 | 4.28e-01 | 94.4% | 92.3% |