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poly-a-_polymerase_catalytic_subunit
Euk-VirPteropox_virus
poly-a-_polymerase_catalytic_subunit__YP_009268744__Pteropox_virus__1873698
Identity
- Accession:
- YP_009268744 ↗
- Protein ID:
- poly-a-_polymerase_catalytic_subunit
- Kingdom:
- euk
Quality
91.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Pteropopoxvirus›
Pteropox_virus
TaxID: 1873698
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-107
Domain cluster:
rep: poly-A-_polymerase_catalytic_subunit_VP55__YP_008003861__Adoxophyes_honmai_entomopoxvirus_L__1293540__D11-107
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12630.14 best | Pox_polyA_pol_N | 136.0 | 8.80e-40 | 100.0% | 93.5% |
D2
high
residues 325-450
Domain cluster:
rep: polyA_polymerase_large_subunit__YP_005296237__Cotia_virus_SPAn232__930275__D325-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12629.14 best | Pox_polyA_pol_C | 140.2 | 1.20e-40 | 100.0% | 62.6% |
D3
medium
residues 111-141_271-318
Domain cluster:
rep: Poly_polymerase_catalytic_subunit_-VP55-__YP_009408437__NY_014_poxvirus__2025360__D118-145_279-313
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12629.14 best | Pox_polyA_pol_C | 55.3 | 1.20e-14 | 59.5% | 23.2% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kbwA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.61 | 48.0 | 3.92e-01 | 87.3% | 95.4% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 32.0 | 3.71e-01 | 73.4% | 82.1% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.53 | 35.0 | 3.84e-01 | 84.8% | 86.9% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 44.0 | 3.37e-01 | 94.9% | 80.0% |
| 2l10A00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.52 | 42.0 | 3.33e-01 | 86.1% | 84.8% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 33.0 | 3.09e-01 | 84.8% | 52.0% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.51 | 33.0 | 3.05e-01 | 82.3% | 50.0% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 39.0 | 3.38e-01 | 86.1% | 85.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945692 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.57 | 37.0 | 3.53e-01 | 73.4% | 55.8% |
| 3247158 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 30.0 | 3.12e-01 | 79.7% | 58.7% |
| 3473554 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.52 | 30.0 | 3.07e-01 | 79.7% | 56.2% |
| 3956209 | 192.8.1.40 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF2742 | 0.51 | 35.0 | 3.38e-01 | 82.3% | 62.2% |
D4
medium
residues 158-270_457-471
Domain cluster:
rep: polyA_polymerase_large_subunit__YP_005296237__Cotia_virus_SPAn232__930275__D122-266_453-469
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03296.21 best | Pox_polyA_pol | 197.3 | 1.50e-58 | 87.5% | 75.0% |