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polyA_polymerase_large_subunit_PAP-L

Euk-Vir

Penguinpox_virus

polyA_polymerase_large_subunit_PAP-L__YP_009046099__Penguinpox_virus__648998

Identity

Accession:
YP_009046099 ↗
Protein ID:
polyA_polymerase_large_subunit_PAP-L
Kingdom:
euk

Quality

91.5 mean pLDDT

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 144-314_456-471
PDB
Domain cluster: rep: putative_polyA_polymerase_catalytic_subunit__YP_009173345__Chrysochromulina_ericina_virus__455364__D206-387
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03296.21 best Pox_polyA_pol 209.3 3.10e-62 68.5% 85.8%
PF12629.14 Pox_polyA_pol_C 54.2 2.60e-14 23.0% 21.2%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3er9B03 3.30.460.60 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Poxvirus poly(A) polymerase, nucleotidyltransferase domain 0.98 68.0 8.21e-01 95.2% 99.2%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.71 58.0 6.04e-01 85.6% 93.1%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.66 54.0 5.39e-01 85.6% 84.4%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.66 52.0 5.64e-01 81.3% 97.4%
3h37A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 41.0 4.63e-01 81.8% 90.3%
1ou5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 38.0 4.26e-01 84.5% 90.7%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 22.0 3.34e-01 71.1% 98.6%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.51 29.0 3.38e-01 84.0% 75.7%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 32.0 3.73e-01 84.0% 89.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.98 83.0 8.90e-01 86.6% 97.6%
1179385 316.1.1.7 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Pox_polyA_pol 0.97 74.0 7.75e-01 81.3% 83.8%
1544851 316.1.1.29 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Poly_A_pol_cat 0.78 64.0 6.25e-01 86.1% 82.9%
4940185 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.74 48.0 5.70e-01 84.5% 94.6%
5035610 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.72 59.0 5.57e-01 86.6% 72.3%
4958430 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.71 59.0 5.44e-01 87.7% 80.8%
3943586 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.71 46.0 5.52e-01 81.3% 97.6%
5081356 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.69 57.0 5.16e-01 85.6% 70.5%
5069234 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.69 53.0 5.51e-01 85.6% 85.5%
5030984 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.69 56.0 5.69e-01 85.6% 86.5%
3633420 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.68 57.0 5.39e-01 88.2% 82.7%
3721514 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.67 57.0 5.31e-01 88.2% 94.7%
5074217 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.67 54.0 5.47e-01 85.0% 89.4%
3197794 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.67 54.0 5.42e-01 84.5% 98.4%
4993561 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.67 53.0 5.52e-01 85.0% 89.1%
3059418 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.66 54.0 5.38e-01 85.6% 84.0%
4993673 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 54.0 5.47e-01 85.0% 87.0%
6828 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.66 52.0 5.66e-01 82.9% 97.5%
5078939 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.66 52.0 5.64e-01 81.8% 97.4%
5078572 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.66 51.0 5.66e-01 80.7% 100.0%
5068144 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 52.0 5.53e-01 82.4% 96.4%
3198176 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 53.0 5.36e-01 85.0% 96.3%
3726440 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.63 51.0 5.22e-01 85.0% 96.8%
5055016 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.63 51.0 4.97e-01 85.0% 81.5%
3640051 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 48.0 4.55e-01 84.0% 86.7%
3638659 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 48.0 4.47e-01 84.0% 79.1%
3197454 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 47.0 4.48e-01 84.0% 81.8%
5078964 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.57 32.0 3.70e-01 94.1% 73.3%
5023105 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 39.0 4.23e-01 93.0% 85.0%
4998245 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.54 37.0 4.07e-01 81.3% 85.2%
3632181 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.52 40.0 4.08e-01 82.4% 81.6%
5035507 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.51 44.0 4.16e-01 92.5% 85.5%
4979605 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 43.0 4.16e-01 93.0% 86.8%
1406320 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.50 22.0 3.15e-01 71.1% 89.0%
D2 high residues 325-451
PDB
Domain cluster: rep: polyA_polymerase_large_subunit__YP_005296237__Cotia_virus_SPAn232__930275__D325-425
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12629.14 best Pox_polyA_pol_C 156.8 9.70e-46 100.0% 63.1%
D3 medium residues 1-109
PDB
Domain cluster: rep: poly-A-_polymerase_catalytic_subunit_VP55__YP_008003861__Adoxophyes_honmai_entomopoxvirus_L__1293540__D11-107
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12630.14 best Pox_polyA_pol_N 135.3 1.40e-39 100.0% 96.3%