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polyA_polymerase_large_subunit

Euk-Vir

Flamingopox_virus_FGPVKD09

polyA_polymerase_large_subunit__YP_009448021__Flamingopox_virus_FGPVKD09__2059380

Identity

Accession:: YP_009448021 ↗
Protein ID:: polyA_polymerase_large_subunit
Kingdom:: euk

Quality

91.6 mean pLDDT

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-109

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12630.14 best	Pox_polyA_pol_N	92.2	3.60e-26	100.0%	64.8%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3er9B01	1.20.1270.320	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Poxvirus poly(A) polymerase, N domain	0.97	93.0	7.81e-01	100.0%	66.0%
3kfvA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	48.0	3.88e-01	97.1%	36.9%
2psmA00	1.20.1250.70	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21	0.65	44.0	3.70e-01	82.9%	41.9%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.62	43.0	4.04e-01	87.1%	58.0%
6elqA01	1.20.1270.30	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.58	48.0	3.73e-01	98.6%	79.0%
4griA04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.57	37.0	4.05e-01	97.1%	88.7%
3lulA01	3.30.470.10	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain	0.57	45.0	3.85e-01	85.7%	72.3%
5xfaA04	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.56	38.0	3.62e-01	80.0%	58.8%
3s64A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.55	40.0	3.86e-01	78.6%	72.8%
1x42A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.54	45.0	4.33e-01	95.7%	95.2%
3ckdA02	1.20.58.360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines	0.54	36.0	3.11e-01	85.7%	39.5%
4m0mA03	1.20.1270.430	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.53	40.0	3.92e-01	98.6%	73.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1407835	4339.1.1.1 ↗	alpha arrays › N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit › N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit › N-terminal helical domain in Poxvirus poly(A) polymerase catalytic subunit › Pox_polyA_pol_N	0.97	93.0	7.72e-01	100.0%	64.2%
4602904	6091.1.1.0 ↗	alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase	0.59	49.0	4.69e-01	100.0%	78.8%
3891733	632.10.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Coronavirus NSP7-like › Coronavirus NSP7-like	0.57	45.0	3.93e-01	85.7%	75.2%
4938927	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.56	44.0	3.98e-01	84.3%	67.4%
3897193	3871.1.1.0 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST	0.56	47.0	3.92e-01	100.0%	57.8%
3411996	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.55	43.0	3.43e-01	84.3%	49.0%
3174828	103.4.1.15 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28865	0.55	44.0	4.24e-01	98.6%	78.8%
3651501	103.4.1.0 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	0.53	39.0	4.00e-01	95.7%	87.7%
3739607	110.1.1.0 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain	0.51	42.0	4.28e-01	95.7%	98.6%
5020381	2005.1.1.4 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase	0.51	42.0	2.81e-01	98.6%	77.9%

D2 high residues 151-314_456-471

PDB

Domain cluster: rep: putative_polyA_polymerase_catalytic_subunit__YP_009173345__Chrysochromulina_ericina_virus__455364__D206-387

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03296.21 best	Pox_polyA_pol	199.0	4.80e-59	67.2%	81.8%
PF12629.14	Pox_polyA_pol_C	54.3	2.50e-14	23.9%	21.2%

D3 high residues 325-451

PDB

Domain cluster: rep: polyA_polymerase_large_subunit__YP_005296237__Cotia_virus_SPAn232__930275__D325-425

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12629.14 best	Pox_polyA_pol_C	155.2	3.00e-45	100.0%	63.1%