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polymerase-associated_protein

Euk-Vir

Furcraea_necrotic_streak_virus

polymerase-associated_protein__YP_007517174__Furcraea_necrotic_streak_virus__676234

Identity

Accession:: YP_007517174 ↗
Protein ID:: polymerase-associated_protein
Kingdom:: euk

Quality

82.2 mean pLDDT

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 617-759

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	95.8	3.70e-27	88.8%	26.5%

D2 medium residues 14-65

PDB

D3 medium residues 66-218

PDB

Domain cluster: rep: replicase__YP_009037607__Moroccan_pepper_virus__208086__D159-283

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08500.17 best	Tombus_P33	49.8	6.80e-13	79.1%	64.4%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3tl4X02	1.10.10.2420	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.63	30.0	4.00e-01	78.4%	88.9%
3hn2A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.59	34.0	3.73e-01	88.9%	68.0%
1ls1A01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.59	29.0	3.75e-01	83.7%	80.9%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.58	31.0	3.83e-01	83.0%	83.0%
1t5oA01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.58	32.0	3.33e-01	83.7%	56.7%
3lssA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.56	25.0	2.90e-01	94.8%	53.6%
4xvxA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.55	34.0	3.84e-01	85.6%	82.0%
1ldjA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.52	36.0	4.08e-01	88.9%	93.9%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.51	34.0	3.95e-01	86.3%	95.5%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4580730	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.79	33.0	5.20e-01	79.1%	100.0%
3952621	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.77	36.0	5.26e-01	82.4%	98.6%
4426344	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.74	35.0	5.07e-01	82.4%	100.0%
4105244	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.74	31.0	4.92e-01	78.4%	100.0%
5036736	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.67	32.0	4.17e-01	85.6%	80.0%
3812110	7088.1.1.1 ↗	alpha arrays › GPI-anchored protein › GPI-anchored protein › GPI-anchored protein › SPARK	0.66	37.0	4.68e-01	83.7%	92.2%
4177832	621.1.1.2 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9	0.66	32.0	4.03e-01	79.7%	73.7%
3170802	101.1.1.133 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Vhr1	0.60	36.0	4.39e-01	92.2%	94.7%
3171699	101.1.1.133 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Vhr1	0.60	35.0	4.22e-01	90.2%	88.0%
4247735	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.59	45.0	2.87e-01	81.0%	78.2%
1694870	3996.1.1.0 ↗	alpha complex topology › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain › Vesicular stomatitis virus L polymerase C-terminal domain	0.57	30.0	3.54e-01	85.6%	71.8%
3789554	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.54	29.0	3.73e-01	85.6%	88.9%
3876519	101.1.5.3 ↗	alpha arrays › HTH › HTH › Anti-sigma factor AsiA › PF27581	0.53	23.0	2.90e-01	99.3%	64.7%
4609494	1197.1.1.1 ↗	alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf	0.53	35.0	3.27e-01	83.0%	52.3%
5051158	3651.1.1.0 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain	0.52	30.0	3.39e-01	84.3%	73.6%
5005237	4967.1.1.11 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM	0.51	30.0	3.02e-01	84.3%	53.8%
1211456	610.3.1.2 ↗	alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R2,tRNA_synt_1c_R1	0.50	38.0	3.53e-01	77.8%	75.3%

D4 medium residues 243-321_388-404

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823__D348-350_352-432_502-513

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	40.4	2.30e-10	62.5%	11.7%

D5 medium residues 322-365_367-387_405-449_475-543

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009336562__Hubei_tombus-like_virus_9__1923296__D77-195_233-294

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	84.0	1.40e-23	61.5%	25.7%
PF00998.29	RdRP_3	113.0	2.20e-32	40.8%	14.6%

D6 medium residues 450-459_461-474_544-616

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	73.7	1.80e-20	75.3%	15.0%