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polymerase-associated_protein
Euk-VirMalakal_virus
polymerase-associated_protein__YP_009094426__Malakal_virus__1229186
Identity
- Accession:
- YP_009094426 ↗
- Protein ID:
- polymerase-associated_protein
- Kingdom:
- euk
Quality
64.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 196-275
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.64 | 55.0 | 4.99e-01 | 97.5% | 81.1% |
| 2k47A00 | 1.10.8.440 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Vesicular stomatitis virus phosphoprotein C-terminal domain | 0.62 | 49.0 | 5.14e-01 | 96.2% | 98.6% |
| 3ifrA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 48.0 | 3.47e-01 | 88.7% | 49.2% |
| 3foeA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 35.0 | 3.73e-01 | 82.5% | 69.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 38.0 | 3.89e-01 | 98.8% | 71.1% |
| 3e0fA02 | 1.10.150.650 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 44.0 | 4.57e-01 | 100.0% | 94.6% |
| 2itmA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 46.0 | 3.33e-01 | 91.3% | 31.1% |
| 2qhoD00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 31.0 | 3.66e-01 | 77.5% | 85.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 34.0 | 3.26e-01 | 96.2% | 53.3% |
| 1yuzA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.54 | 27.0 | 3.38e-01 | 96.2% | 94.7% |
| 3ougA00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 37.0 | 3.45e-01 | 100.0% | 56.6% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 37.0 | 3.58e-01 | 100.0% | 65.9% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.52 | 35.0 | 3.62e-01 | 100.0% | 75.7% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.35e-01 | 100.0% | 57.4% |
| 4u3qB00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 43.0 | 4.11e-01 | 100.0% | 98.0% |
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 37.0 | 2.62e-01 | 82.5% | 63.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 137455 | 4069.1.1.2 ↗ | alpha arrays › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain › PP_M1 | 0.65 | 54.0 | 5.03e-01 | 96.2% | 82.2% |
| 3549913 | 376.1.1.14 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › UPF1_Zn_bind | 0.63 | 35.0 | 3.64e-01 | 90.0% | 56.0% |
| 4605699 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.62 | 51.0 | 4.51e-01 | 92.5% | 79.2% |
| 3610347 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.59 | 52.0 | 5.13e-01 | 98.8% | 92.9% |
| 5062398 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.58 | 46.0 | 3.36e-01 | 90.0% | 84.1% |
| 3523119 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.55 | 46.0 | 3.20e-01 | 97.5% | 40.3% |
| 5022231 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 34.0 | 3.02e-01 | 100.0% | 41.6% |
| 3175102 | 2008.1.1.79 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pet127 | 0.52 | 41.0 | 2.75e-01 | 90.0% | 54.1% |
| 3929515 | 382.1.1.21 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 | 0.52 | 36.0 | 3.40e-01 | 75.0% | 85.7% |
| 3719741 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 33.0 | 3.84e-01 | 95.0% | 96.4% |
| 3472209 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 42.0 | 3.06e-01 | 96.2% | 35.8% |
| 3251081 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 38.0 | 3.25e-01 | 98.8% | 45.5% |
| 3784544 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.51 | 36.0 | 3.17e-01 | 75.0% | 98.4% |
| 3870848 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 2.42e-01 | 81.2% | 45.2% |