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polymerase-associated_protein
Euk-VirAdelaide_River_virus
polymerase-associated_protein__YP_009177240__Adelaide_River_virus__31612
Identity
- Accession:
- YP_009177240 ↗
- Protein ID:
- polymerase-associated_protein
- Kingdom:
- euk
Quality
55.0
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ephemerovirus›
Adelaide_River_virus
TaxID: 31612
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 215-299
Domain cluster:
rep: polymerase-associated_protein__YP_009094426__Malakal_virus__1229186__D196-275
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.68 | 60.0 | 5.55e-01 | 100.0% | 85.6% |
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 34.0 | 3.45e-01 | 98.8% | 59.8% |
| 2i6tA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.54 | 36.0 | 3.02e-01 | 97.6% | 37.5% |
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.20e-01 | 95.3% | 56.7% |
| 2a1vA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 43.0 | 3.77e-01 | 98.8% | 94.9% |
| 4byfC01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.51 | 34.0 | 3.43e-01 | 95.3% | 67.4% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.50 | 36.0 | 3.84e-01 | 100.0% | 87.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2863102 | 4069.1.1.0 ↗ | alpha arrays › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain | 0.69 | 61.0 | 5.69e-01 | 100.0% | 88.0% |
| 137455 | 4069.1.1.2 ↗ | alpha arrays › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain › PP_M1 | 0.69 | 60.0 | 5.65e-01 | 100.0% | 88.8% |
| 4425819 | 376.1.3.7 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RAG2_PHD | 0.62 | 36.0 | 3.83e-01 | 83.5% | 64.0% |
| 3824691 | 375.3.1.4 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › Zn_ribbon_20 | 0.59 | 30.0 | 3.77e-01 | 85.9% | 84.0% |
| 3486347 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 38.0 | 3.69e-01 | 97.6% | 62.1% |
| 4505050 | 148.1.3.27 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 | 0.56 | 47.0 | 3.94e-01 | 91.8% | 71.0% |
| 5066729 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.53 | 36.0 | 3.54e-01 | 100.0% | 65.6% |
| 3544014 | 633.23.1.40 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › TM225 | 0.53 | 46.0 | 3.73e-01 | 100.0% | 71.2% |
| 4930774 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 46.0 | 3.95e-01 | 100.0% | 80.6% |
| 3391689 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.52 | 37.0 | 2.93e-01 | 100.0% | 35.6% |