←Back to structures
polymerase_PA
Euk-VirInfluenza_B_virus_-B_Lee_1940-
polymerase_PA__NP_056659__Influenza_B_virus_-B_Lee_1940-__518987
Identity
- Accession:
- NP_056659 ↗
- Protein ID:
- polymerase_PA
- Kingdom:
- euk
Quality
54.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Insthoviricetes›
Articulavirales›
Orthomyxoviridae›
Betainfluenzavirus›
Influenza_B_virus_(B/Lee/1940)
TaxID: 518987
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-191
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00603.25 best | Flu_PA | 268.1 | 2.30e-79 | 89.5% | 24.6% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.96 | 85.0 | 8.76e-01 | 100.0% | 95.6% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.94 | 92.0 | 9.25e-01 | 100.0% | 100.0% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.94 | 78.0 | 8.54e-01 | 95.8% | 100.0% |
| 4cgsA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.86 | 72.0 | 7.66e-01 | 100.0% | 98.2% |
| 4cgxA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.86 | 69.0 | 7.51e-01 | 99.5% | 98.1% |
| 2gjwC01 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.70 | 33.0 | 3.85e-01 | 78.5% | 60.7% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.65 | 31.0 | 4.35e-01 | 73.8% | 93.4% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 31.0 | 4.18e-01 | 82.2% | 96.0% |
| 6mtzA01 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.55 | 27.0 | 3.46e-01 | 78.5% | 79.4% |
| 3grfA01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.55 | 26.0 | 3.04e-01 | 70.2% | 59.4% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 27.0 | 3.53e-01 | 76.4% | 86.1% |
| 3dfuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 34.0 | 4.03e-01 | 82.7% | 91.5% |
| 4dunA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 26.0 | 3.14e-01 | 73.8% | 68.5% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 32.0 | 3.82e-01 | 100.0% | 89.8% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.52 | 36.0 | 3.49e-01 | 71.2% | 69.4% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 33.0 | 3.69e-01 | 80.1% | 81.9% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 25.0 | 3.27e-01 | 73.3% | 85.6% |
| 6z9uA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 24.0 | 3.42e-01 | 80.1% | 100.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2846582 | 2008.1.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA | 0.96 | 86.0 | 8.76e-01 | 100.0% | 94.0% |
| 4863355 | 2008.1.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA | 0.96 | 91.0 | 8.07e-01 | 100.0% | 73.5% |
| 2392643 | 2008.1.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA | 0.92 | 80.0 | 7.58e-01 | 100.0% | 77.7% |
| 4859809 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.86 | 69.0 | 7.51e-01 | 99.0% | 96.9% |
| 1144326 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.86 | 72.0 | 7.64e-01 | 100.0% | 97.6% |
| 4964435 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 32.0 | 4.23e-01 | 71.7% | 93.3% |
| 4930363 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.60 | 33.0 | 4.31e-01 | 77.5% | 95.4% |
| 4222853 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.59 | 30.0 | 3.71e-01 | 79.1% | 78.3% |
| 3413902 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.59 | 31.0 | 4.20e-01 | 79.6% | 97.1% |
| 3386830 | 3105.1.1.0 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related | 0.58 | 32.0 | 3.81e-01 | 75.9% | 77.7% |
| 3725765 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.56 | 35.0 | 3.48e-01 | 71.7% | 57.6% |
| 3502069 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 39.0 | 4.28e-01 | 70.7% | 86.3% |
| 4965173 | 2008.1.1.231 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF25902 | 0.56 | 43.0 | 4.70e-01 | 83.2% | 96.9% |
| 4025458 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.55 | 26.0 | 3.23e-01 | 78.5% | 71.3% |
| 3386658 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.55 | 36.0 | 3.74e-01 | 78.5% | 70.3% |
| 5023370 | 2007.23.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › CbiG N-terminal domain-like › CbiG N-terminal domain-like › DUF2117 | 0.54 | 37.0 | 4.14e-01 | 80.1% | 87.3% |
| 4927469 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 33.0 | 3.94e-01 | 85.3% | 91.2% |
| 4945135 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 33.0 | 3.69e-01 | 91.6% | 78.0% |
| 4995697 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 36.0 | 3.54e-01 | 71.2% | 62.9% |
| 4617209 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.52 | 47.0 | 4.25e-01 | 96.3% | 96.5% |
| 3999372 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.51 | 26.0 | 3.16e-01 | 93.2% | 72.8% |
D2
medium
residues 285-373_436-594_625-637