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polymerase_PB1
Euk-VirInfluenza_B_virus_-B_Lee_1940-
polymerase_PB1__NP_056657__Influenza_B_virus_-B_Lee_1940-__518987
Identity
- Accession:
- NP_056657 ↗
- Protein ID:
- polymerase_PB1
- Kingdom:
- euk
Quality
69.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Insthoviricetes›
Articulavirales›
Orthomyxoviridae›
Betainfluenzavirus›
Influenza_B_virus_(B/Lee/1940)
TaxID: 518987
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 100-183_202-266_331-352
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00602.23 best | Flu_PB1 | 112.7 | 2.30e-32 | 50.3% | 11.5% |
| PF00602.23 | Flu_PB1 | 107.4 | 8.90e-31 | 40.4% | 9.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hekA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.59 | 37.0 | 4.36e-01 | 90.6% | 91.4% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.59 | 55.0 | 3.85e-01 | 100.0% | 46.5% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.50 | 28.0 | 3.51e-01 | 87.1% | 94.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1411401 | 304.48.1.7 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 | 0.94 | 91.0 | 6.30e-01 | 100.0% | 51.6% |
| 1695458 | 304.48.1.7 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 | 0.94 | 91.0 | 6.34e-01 | 100.0% | 50.2% |
| 4859811 | 304.48.1.7 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 | 0.89 | 86.0 | 6.08e-01 | 100.0% | 50.9% |
| 5018572 | 304.48.1.72 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_N | 0.67 | 42.0 | 4.13e-01 | 87.1% | 58.9% |
| 2850105 | 304.48.1.19 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Bunya_RdRp | 0.61 | 51.0 | 4.37e-01 | 87.1% | 63.7% |
| 4071235 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 48.0 | 3.40e-01 | 100.0% | 36.6% |
| 4138932 | 304.48.1.72 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_N | 0.52 | 47.0 | 3.89e-01 | 98.2% | 62.0% |
| 996352 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.51 | 29.0 | 2.39e-01 | 94.7% | 29.9% |
| 3923013 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.51 | 46.0 | 3.67e-01 | 98.2% | 55.1% |
D2
medium
residues 713-751