polymerase

Euk-Vir

Elm_mottle_virus

polymerase__NP_619575__Elm_mottle_virus__56486

Identity

69.1 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Elm_mottle_virus

TaxID: 56486

View cluster (23 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64

PDB

D2 medium residues 190-209_587-670

PDB

Domain cluster: rep: replication-associated_polyprotein_2a__YP_009165997__Privet_ringspot_virus__2169960__D620-694

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	44.2	1.80e-11	89.4%	18.9%

D3 medium residues 259-289_348-380_474-513

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009104368__Lilac_leaf_chlorosis_virus__722755__D366-393_450-485_578-603

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	43.0	4.00e-11	41.3%	9.1%
PF00978.27	RdRP_2	51.6	1.00e-13	38.5%	8.9%
PF00978.27	RdRP_2	32.0	9.00e-08	32.7%	7.3%

D4 medium residues 290-347_381-408_443-473

PDB

Domain cluster: rep: ORF_1b__YP_003289291__Strawberry_pallidosis-associated_virus__227507__D117-174_213-235_276-309

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3umgA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.57	35.0	4.23e-01	84.6%	100.0%
3t69A02	3.30.420.310	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain	0.54	42.0	3.38e-01	82.1%	61.5%
2wiyA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.53	46.0	3.27e-01	99.1%	84.8%
3k9vA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.51	45.0	3.07e-01	100.0%	82.8%
2looA02	1.10.10.1740	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like	0.51	29.0	3.44e-01	76.1%	85.3%
1zymA02	1.10.274.10	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain	0.50	31.0	3.09e-01	80.3%	57.1%
1jjvA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	40.0	3.38e-01	84.6%	76.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4135638	2484.1.1.37 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase	0.53	41.0	3.90e-01	80.3%	82.2%
3685065	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.50	40.0	3.00e-01	87.2%	89.5%

D5 medium residues 409-442_514-586

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	68.8	6.20e-19	69.2%	13.6%