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polymerase
Euk-VirHuman_T-lymphotropic_virus_4
polymerase__YP_002455786__Human_T-lymphotropic_virus_4__318279
Identity
- Accession:
- YP_002455786 ↗
- Protein ID:
- polymerase
- Kingdom:
- euk
Quality
78.4
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Retroviridae›
Deltaretrovirus›
Human_T-lymphotropic_virus_4
TaxID: 318279
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 469-601
Domain cluster:
rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D435-467_490-507_524-584
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00075.31 best | RNase_H | 29.2 | 1.30e-06 | 91.0% | 85.8% |
D2
high
residues 663-819
Domain cluster:
rep: AB916497.1__BAS32805.1__X__00007__D17-171
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00665.33 best | rve | 90.4 | 1.10e-25 | 61.8% | 97.1% |
D3
medium
residues 34-106_131-166
D4
medium
residues 107-130_167-255
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00078.33 best | RVT_1 | 60.0 | 4.40e-16 | 72.6% | 41.5% |
D5
medium
residues 266-322_340-377_398-463
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 22.0 | 3.10e-01 | 87.0% | 74.1% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.52 | 35.0 | 4.13e-01 | 83.2% | 96.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3934887 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.77 | 32.0 | 4.76e-01 | 92.5% | 85.3% |
| 3937433 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.55 | 41.0 | 4.58e-01 | 85.7% | 99.2% |
| 3930361 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.54 | 40.0 | 4.51e-01 | 82.6% | 100.0% |
| 4055808 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.53 | 40.0 | 4.43e-01 | 85.1% | 96.2% |
| 3510735 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.53 | 40.0 | 4.36e-01 | 86.3% | 93.3% |
| 3927914 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.53 | 40.0 | 4.32e-01 | 86.3% | 92.6% |
| 3931383 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.53 | 40.0 | 4.38e-01 | 85.1% | 96.2% |
D6
medium
residues 602-662
Domain cluster:
rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D585-635
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02022.26 best | Integrase_Zn | 49.5 | 4.70e-13 | 60.7% | 92.1% |