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polymerase

Euk-Vir

Euproctis_pseudoconspersa_nucleopolyhedrovirus

polymerase__YP_002854676__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467

Identity

Accession:: YP_002854676 ↗
Protein ID:: polymerase
Kingdom:: euk

Quality

80.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Euproctis_pseudoconspersa_nucleopolyhedrovirus

TaxID: 307467

Cluster

View cluster (158 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-210

PDB

Domain cluster: rep: DNA_polymerase__YP_009666761__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D1-67_114-188

D2 medium residues 215-308

PDB

Domain cluster: rep: DNA_polymerase_elongation_subunit_family_B__YP_010088005__Lymphocystis_disease_virus_4__2704413__D159-241

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03104.26 best	DNA_pol_B_exo1	36.1	6.70e-09	98.9%	36.8%

D3 medium residues 467-522_639-691

PDB

Domain cluster: rep: IMGVR_UViG_3300048031_000811-3300048031-Ga0494182_008429_2395_4416__D190-244_288-384

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	25.6	7.20e-06	84.4%	11.9%

D4 medium residues 549-582_617-638_692-703

PDB

Domain cluster: rep: DNA_polymerase__YP_009316112__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D473-499_523-556

D5 medium residues 583-616_704-812

PDB

Domain cluster: rep: DNA_polymerase_catalytic_subunit__YP_009552191__Malacosoma_neustria_nucleopolyhedrovirus__38012__D557-567_668-765

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	41.8	8.70e-11	78.3%	22.1%
PF00136.27	DNA_pol_B	31.4	1.30e-07	23.8%	7.1%

D6 medium residues 973-1018_1035-1067

PDB

Domain cluster: representative

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dpoB00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.62	40.0	3.71e-01	73.4%	50.5%
4dn9B00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.62	38.0	3.58e-01	73.4%	49.5%
1rwuA00	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.61	37.0	3.62e-01	73.4%	54.0%
6j09A04	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.61	43.0	4.34e-01	73.4%	94.8%
3nuhB03	3.10.20.690	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.61	43.0	4.16e-01	74.7%	66.3%
1m0sA02	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.60	34.0	3.57e-01	73.4%	59.7%
6j09A02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.59	41.0	4.19e-01	73.4%	78.2%
4v19R01	3.90.1030.10	Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17	0.59	41.0	3.72e-01	73.4%	85.7%
6kmoB00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.58	42.0	2.76e-01	75.9%	50.0%
1odfA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	47.0	3.36e-01	96.2%	38.2%
2p92A00	3.30.70.1490	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp	0.56	41.0	3.90e-01	78.5%	69.5%
2vfrA04	3.30.70.2520	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	38.0	3.68e-01	73.4%	61.7%
4k3cA01	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.55	39.0	3.92e-01	75.9%	91.5%
2qdfA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.54	38.0	3.80e-01	75.9%	75.9%
2hc5A01	3.30.160.170	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like	0.54	38.0	3.62e-01	74.7%	61.2%
3pm9A04	3.30.70.2740	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	32.0	3.20e-01	74.7%	54.0%
4mtnA01	3.30.1480.10	Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain	0.53	40.0	3.79e-01	82.3%	94.7%
6wimA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.52	36.0	3.71e-01	72.2%	93.2%
6lciA01	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.52	39.0	3.25e-01	79.7%	91.6%
6ofsA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.52	43.0	3.20e-01	93.7%	71.2%
3h8gA01	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.51	39.0	3.11e-01	82.3%	70.2%
1jw3A00	3.55.10.10	Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain	0.50	40.0	3.36e-01	87.3%	52.1%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3970718	3675.1.1.0 ↗	a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain	0.63	45.0	3.65e-01	74.7%	45.3%
3838168	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.63	45.0	2.86e-01	75.9%	40.8%
4881208	3121.1.1.1 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA	0.60	43.0	4.27e-01	75.9%	86.7%
2547935	3121.1.1.1 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA	0.60	43.0	4.19e-01	75.9%	84.3%
4459240	3121.1.1.1 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA	0.60	43.0	4.30e-01	75.9%	90.0%
4832852	218.3.1.1 ↗	a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17	0.60	43.0	3.61e-01	75.9%	73.3%
3248387	218.3.1.1 ↗	a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17	0.59	41.0	3.60e-01	73.4%	75.2%
4647008	312.1.1.11 ↗	a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N	0.59	42.0	3.32e-01	75.9%	94.7%
4085807	3121.1.1.1 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA	0.58	42.0	4.11e-01	75.9%	76.5%
3839154	3121.1.1.1 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA	0.58	41.0	4.06e-01	74.7%	84.7%
4077196	2004.1.1.442 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21	0.58	41.0	2.57e-01	75.9%	50.7%
4285299	3121.1.1.1 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA	0.58	40.0	4.07e-01	74.7%	86.3%
3387643	3121.1.1.1 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA	0.57	41.0	4.11e-01	75.9%	92.5%
4963974	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.57	49.0	3.23e-01	94.9%	51.9%
3599395	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.54	42.0	2.68e-01	83.5%	96.7%
3965239	3121.1.1.3 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2	0.54	38.0	3.86e-01	74.7%	92.5%
4947704	312.1.1.0 ↗	a+b three layers › HIT-like › HIT-related › HIT-related	0.54	38.0	3.21e-01	74.7%	53.1%
4139793	218.3.1.1 ↗	a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17	0.54	38.0	3.32e-01	75.9%	73.8%
4264650	218.3.1.1 ↗	a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17	0.54	38.0	3.21e-01	74.7%	73.6%
3993749	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.51	35.0	2.62e-01	72.2%	42.1%
3373362	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	44.0	2.62e-01	100.0%	30.8%