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polymerase

Euk-Vir

Fengkai_orbivirus

polymerase__YP_009163940__Fengkai_orbivirus__1692107

Identity

Accession:: YP_009163940 ↗
Protein ID:: polymerase
Kingdom:: euk

Quality

74.5 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Fengkai_orbivirus

TaxID: 1692107

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 241-387

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009158901__Chobar_Gorge_virus__1679172__D209-255_289-364

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	255.3	1.40e-75	100.0%	11.4%

D2 medium residues 1-37_949-978

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4huqS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.50	37.0	2.79e-01	79.1%	40.9%

D3 medium residues 72-226

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009047258__Umatilla_virus__40060__D70-244_849-867

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	201.7	2.10e-59	100.0%	11.9%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA02	1.20.120.1390	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.71	60.0	6.05e-01	91.6%	88.9%
1zv1A00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.65	23.0	3.64e-01	94.2%	81.4%
3fkeA01	1.10.8.950	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain	0.55	25.0	3.67e-01	91.0%	94.4%
2b8iA00	1.20.1280.100	Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain	0.54	25.0	3.43e-01	89.0%	87.0%
2axyA00	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.52	27.0	3.53e-01	72.3%	100.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5046473	601.3.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain	0.59	28.0	3.65e-01	96.1%	77.8%

D4 medium residues 430-561_601-650

PDB

D5 medium residues 562-600_722-839

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	224.5	2.70e-66	75.8%	9.1%
PF05788.19	Orbi_VP1	69.9	1.30e-19	25.5%	3.0%

D6 medium residues 1078-1116_1190-1260

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05788.19 best	Orbi_VP1	108.6	2.60e-31	67.3%	5.6%
PF05788.19	Orbi_VP1	45.3	3.40e-12	36.4%	3.0%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA07	3.30.230.140	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.78	62.0	6.05e-01	100.0%	77.5%
4xkjA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.58	40.0	3.80e-01	72.7%	96.3%
4xxhA01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.57	43.0	4.03e-01	80.9%	97.8%
2cb0A01	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.54	45.0	4.01e-01	91.8%	93.7%
5kfnA01	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.52	37.0	3.18e-01	74.5%	63.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1173790	4962.1.1.3 ↗	alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › Rotavirus_VP1	0.80	74.0	5.19e-01	100.0%	54.4%
1697853	4962.1.1.2 ↗	alpha complex topology › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › C-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5	0.69	63.0	4.33e-01	100.0%	51.2%
3253767	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.60	35.0	3.11e-01	70.0%	40.6%
4128955	212.1.1.8 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P	0.59	42.0	3.93e-01	98.2%	61.5%