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polymerase_protein
Euk-VirSheldgoose_hepatitis_B_virus
polymerase_protein__YP_024974__Sheldgoose_hepatitis_B_virus__259898
Identity
- Accession:
- YP_024974 ↗
- Protein ID:
- polymerase_protein
- Kingdom:
- euk
Quality
70.7
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Blubervirales›
Hepadnaviridae›
Avihepadnavirus›
Sheldgoose_hepatitis_B_virus
TaxID: 259898
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-97_582-661
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00336.24 best | DNA_pol_viral_C | 140.1 | 1.10e-40 | 77.9% | 34.0% |
| PF00242.23 | DNA_pol_viral_N | 31.2 | 2.10e-07 | 73.5% | 8.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qyuA04 | 1.10.4140.10 | Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL) | 0.60 | 46.0 | 3.87e-01 | 80.5% | 65.3% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 41.0 | 4.08e-01 | 70.8% | 96.7% |
| 4nt1A00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.57 | 39.0 | 3.31e-01 | 70.8% | 78.5% |
| 1iygA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 39.0 | 3.72e-01 | 81.4% | 81.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3936602 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.83 | 53.0 | 6.46e-01 | 70.8% | 98.7% |
| 3824050 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.80 | 53.0 | 6.03e-01 | 70.8% | 89.4% |
| 3929262 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.80 | 52.0 | 6.27e-01 | 70.8% | 100.0% |
| 3924778 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.78 | 51.0 | 5.99e-01 | 70.8% | 95.0% |
| 3737899 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.78 | 52.0 | 6.13e-01 | 70.8% | 97.5% |
| 3937630 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.77 | 50.0 | 6.01e-01 | 70.8% | 100.0% |
| 3254770 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.76 | 51.0 | 5.26e-01 | 70.8% | 73.3% |
| 2757013 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.75 | 51.0 | 5.79e-01 | 70.8% | 92.9% |
| 3927690 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.74 | 51.0 | 5.87e-01 | 70.8% | 98.8% |
| 3934727 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.74 | 51.0 | 5.78e-01 | 70.8% | 96.5% |
| 3934191 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.73 | 50.0 | 5.79e-01 | 70.8% | 100.0% |
| 3937707 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.72 | 50.0 | 5.81e-01 | 70.8% | 100.0% |
| 3845825 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.71 | 48.0 | 5.54e-01 | 70.8% | 97.5% |
| 4975293 | 601.28.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › VPS28 | 0.69 | 48.0 | 5.05e-01 | 70.8% | 96.0% |
| 4301076 | 5069.1.1.54 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrome_B, Cytochrom_B_N_2 | 0.59 | 41.0 | 3.14e-01 | 70.8% | 72.1% |
| 366446 | 108.1.1.8 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100 | 0.56 | 38.0 | 4.09e-01 | 77.9% | 83.9% |
| 4026127 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 32.0 | 3.85e-01 | 87.6% | 92.0% |
| 415002 | 108.1.1.8 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100 | 0.50 | 34.0 | 3.66e-01 | 76.1% | 83.9% |
D2
medium
residues 101-205_388-435_466-491
Domain cluster:
rep: polymerase__YP_009666523__Capuchin_monkey_hepatitis_B_virus__2163996__D118-179_345-399_430-446_502-516
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00242.23 best | DNA_pol_viral_N | 178.9 | 2.80e-52 | 93.8% | 31.7% |
D3
medium
residues 436-465_492-581
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00078.33 best | RVT_1 | 48.7 | 1.20e-12 | 70.8% | 40.5% |
D4
medium
residues 667-796
Domain cluster:
rep: OQ808965.1__WGH50389.1__FNU3_71__00071__D62-192
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00336.24 best | DNA_pol_viral_C | 223.9 | 2.90e-66 | 100.0% | 61.4% |