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polyprotein_2
Euk-VirRed_clover_nepovirus_A
polyprotein_2__YP_009551523__Red_clover_nepovirus_A__2058094
Identity
- Accession:
- YP_009551523 ↗
- Protein ID:
- polyprotein_2
- Kingdom:
- euk
Quality
47.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1188-1338
Domain cluster:
rep: hypothetical_protein_2__YP_009337767__Sanxia_picorna-like_virus_3__1923372__D664-871
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03688.21 best | Nepo_coat_C | 143.4 | 8.10e-42 | 100.0% | 93.2% |
CATH (73)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pgl100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.83 | 78.0 | 7.24e-01 | 100.0% | 88.1% |
| 2y26A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 76.0 | 7.47e-01 | 100.0% | 91.4% |
| 1a6cA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.81 | 77.0 | 7.43e-01 | 100.0% | 90.9% |
| 7chkB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 61.0 | 6.48e-01 | 100.0% | 99.2% |
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 46.0 | 5.44e-01 | 96.0% | 90.4% |
| 2ws9100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 64.0 | 5.41e-01 | 100.0% | 73.2% |
| 5aca300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 63.0 | 5.55e-01 | 100.0% | 73.0% |
| 4oq8A00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.68 | 52.0 | 5.33e-01 | 100.0% | 83.3% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 61.0 | 4.99e-01 | 100.0% | 65.2% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 61.0 | 5.01e-01 | 100.0% | 64.3% |
| 6tfjA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.66 | 42.0 | 4.79e-01 | 94.0% | 84.3% |
| 6mrmC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 60.0 | 5.81e-01 | 100.0% | 92.3% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 45.0 | 5.05e-01 | 97.4% | 91.4% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 60.0 | 4.96e-01 | 100.0% | 62.3% |
| 3kq4B03 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.65 | 44.0 | 5.01e-01 | 97.4% | 93.8% |
| 2wnoA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.64 | 44.0 | 4.94e-01 | 100.0% | 93.8% |
| 1yi9A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 45.0 | 4.73e-01 | 100.0% | 81.0% |
| 6fzvD01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.63 | 44.0 | 4.82e-01 | 100.0% | 89.8% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 53.0 | 5.58e-01 | 97.4% | 99.3% |
| 1pgsA01 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 52.0 | 5.44e-01 | 100.0% | 97.0% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 54.0 | 5.52e-01 | 97.4% | 95.2% |
| 2erjB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 36.0 | 4.17e-01 | 98.7% | 79.8% |
| 1ohfA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 56.0 | 4.53e-01 | 100.0% | 87.8% |
| 1mkfA01 | 2.60.40.1330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 49.0 | 4.50e-01 | 99.3% | 63.8% |
| 3kt4A02 | 3.60.130.20 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain | 0.61 | 44.0 | 3.51e-01 | 99.3% | 35.8% |
| 2x9zA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.60 | 36.0 | 4.07e-01 | 85.4% | 77.9% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 52.0 | 5.28e-01 | 100.0% | 92.8% |
| 1df0A03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 49.0 | 5.21e-01 | 99.3% | 98.5% |
| 3b83C00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 36.0 | 4.38e-01 | 94.0% | 94.9% |
| 5j09A00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.58 | 53.0 | 5.13e-01 | 100.0% | 95.9% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 34.0 | 4.27e-01 | 92.1% | 98.9% |
| 1dg6A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 52.0 | 5.31e-01 | 98.7% | 98.0% |
| 7ox5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 35.0 | 4.07e-01 | 98.0% | 86.4% |
| 2w3jA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 47.0 | 4.90e-01 | 100.0% | 94.9% |
| 1lwrA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 36.0 | 4.31e-01 | 93.4% | 96.9% |
| 1jhjA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 49.0 | 4.84e-01 | 98.0% | 86.3% |
| 1wfnA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 34.0 | 4.25e-01 | 94.0% | 100.0% |
| 2crmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 31.0 | 4.08e-01 | 86.8% | 100.0% |
| 3tesA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 4.31e-01 | 93.4% | 98.9% |
| 3r8qA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 4.26e-01 | 92.7% | 98.9% |
| 1fnfA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 33.0 | 4.20e-01 | 90.1% | 98.9% |
| 1wfoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 4.13e-01 | 92.7% | 90.4% |
| 1gnyA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 51.0 | 5.11e-01 | 99.3% | 97.4% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 4.17e-01 | 87.4% | 91.8% |
| 1fyhB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 4.06e-01 | 93.4% | 93.8% |
| 1uwwB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 50.0 | 4.75e-01 | 98.7% | 91.6% |
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 4.31e-01 | 100.0% | 65.9% |
| 1fnfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 4.13e-01 | 90.1% | 98.9% |
| 4lhsA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 47.0 | 4.76e-01 | 98.0% | 93.3% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 49.0 | 4.92e-01 | 98.7% | 97.4% |
| 2ibgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 4.19e-01 | 93.4% | 98.0% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.54 | 37.0 | 4.25e-01 | 94.0% | 98.1% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.96e-01 | 92.7% | 98.9% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 44.0 | 4.62e-01 | 97.4% | 97.8% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 49.0 | 4.85e-01 | 99.3% | 96.8% |
| 5jtwA02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.53 | 35.0 | 4.13e-01 | 93.4% | 100.0% |
| 3gqcC04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 38.0 | 4.22e-01 | 100.0% | 95.0% |
| 2dbjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 4.06e-01 | 93.4% | 93.6% |
| 2opwA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.52 | 42.0 | 3.46e-01 | 100.0% | 45.8% |
| 5gxxA02 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.52 | 46.0 | 4.61e-01 | 98.0% | 94.3% |
| 1wkyA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 46.0 | 4.76e-01 | 96.0% | 99.3% |
| 3b4nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.78e-01 | 90.7% | 96.6% |
| 7k7jA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 46.0 | 4.42e-01 | 97.4% | 99.4% |
| 5l73A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 47.0 | 4.48e-01 | 99.3% | 90.2% |
| 1jv2A04 | 2.60.40.1530 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 | 0.51 | 47.0 | 4.34e-01 | 100.0% | 86.7% |
| 4eqvA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.51 | 46.0 | 4.43e-01 | 99.3% | 97.2% |
| 3im1A03 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 37.0 | 4.11e-01 | 96.7% | 98.3% |
| 5f7uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.82e-01 | 90.1% | 91.0% |
| 1va9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.82e-01 | 92.1% | 86.1% |
| 1x5xA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.75e-01 | 93.4% | 89.0% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 4.04e-01 | 96.7% | 98.2% |
| 2j1aA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 43.0 | 4.49e-01 | 96.0% | 100.0% |
| 7lyuA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 45.0 | 4.22e-01 | 99.3% | 91.1% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1220 | 10.2.1.25 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_SCP | 0.83 | 78.0 | 7.24e-01 | 100.0% | 88.1% |
| 1720475 | 10.2.1.25 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_SCP | 0.83 | 78.0 | 7.09e-01 | 100.0% | 81.1% |
| 143450 | 10.2.1.37 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C | 0.82 | 76.0 | 7.47e-01 | 100.0% | 91.4% |
| 1216 | 10.2.1.37 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C | 0.81 | 77.0 | 7.43e-01 | 100.0% | 90.9% |
| 3938922 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.70 | 47.0 | 5.14e-01 | 100.0% | 83.3% |
| 5083851 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.70 | 50.0 | 5.69e-01 | 100.0% | 97.4% |
| 3620465 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.69 | 54.0 | 5.67e-01 | 99.3% | 90.4% |
| 2539045 | 10.2.1.12 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Luteo_coat | 0.69 | 58.0 | 5.92e-01 | 100.0% | 92.5% |
| 4019681 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.69 | 51.0 | 5.35e-01 | 100.0% | 83.6% |
| 3661896 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.68 | 50.0 | 5.14e-01 | 100.0% | 80.0% |
| 3614575 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.67 | 55.0 | 5.64e-01 | 100.0% | 89.0% |
| 3940996 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.67 | 43.0 | 4.88e-01 | 97.4% | 85.1% |
| 3581509 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.65 | 44.0 | 4.82e-01 | 99.3% | 85.0% |
| 4882276 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.65 | 57.0 | 5.27e-01 | 94.0% | 88.4% |
| 3898740 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.63 | 52.0 | 5.43e-01 | 100.0% | 94.9% |
| 3998968 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.63 | 55.0 | 5.60e-01 | 99.3% | 95.9% |
| 3620107 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.63 | 53.0 | 5.51e-01 | 97.4% | 96.4% |
| 3990817 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 49.0 | 4.63e-01 | 99.3% | 69.7% |
| 5032679 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.63 | 52.0 | 5.42e-01 | 100.0% | 95.0% |
| 3890782 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.62 | 54.0 | 5.54e-01 | 99.3% | 96.6% |
| 3406853 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.62 | 44.0 | 4.88e-01 | 98.0% | 91.7% |
| 3790075 | 10.32.1.222 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ATRN | 0.62 | 49.0 | 5.19e-01 | 100.0% | 94.6% |
| 3526189 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.62 | 53.0 | 5.41e-01 | 96.7% | 92.0% |
| 3723511 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.62 | 49.0 | 5.35e-01 | 97.4% | 100.0% |
| 3323193 | 207.1.1.119 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_13 | 0.62 | 46.0 | 3.15e-01 | 100.0% | 21.8% |
| 3565481 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 36.0 | 4.24e-01 | 98.7% | 81.9% |
| 3217657 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.62 | 45.0 | 4.86e-01 | 98.7% | 90.4% |
| 3936599 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.62 | 54.0 | 5.50e-01 | 98.7% | 97.2% |
| 3876166 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.62 | 53.0 | 5.54e-01 | 98.0% | 100.0% |
| 3327034 | 10.41.1.1 ↗ | beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain › Hikeshi-like_N | 0.62 | 44.0 | 4.78e-01 | 88.1% | 88.0% |
| 5038720 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 46.0 | 5.16e-01 | 91.4% | 99.2% |
| 3875909 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.61 | 51.0 | 4.95e-01 | 100.0% | 80.6% |
| 3509961 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 47.0 | 4.68e-01 | 98.7% | 78.7% |
| 3244081 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.59 | 43.0 | 4.70e-01 | 97.4% | 93.3% |
| 3514073 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 37.0 | 4.05e-01 | 96.7% | 75.2% |
| 3786014 | 10.32.1.237 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 | 0.59 | 50.0 | 5.22e-01 | 97.4% | 97.9% |
| 3902712 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.59 | 51.0 | 4.58e-01 | 100.0% | 68.8% |
| 3858842 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.58 | 36.0 | 4.35e-01 | 91.4% | 95.8% |
| 3805836 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 45.0 | 4.72e-01 | 99.3% | 90.4% |
| 3474757 | 10.32.1.188 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM181_GOLD | 0.58 | 45.0 | 4.47e-01 | 100.0% | 76.9% |
| 3820882 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.58 | 52.0 | 4.94e-01 | 96.7% | 88.0% |
| 3873657 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.57 | 49.0 | 4.40e-01 | 99.3% | 66.0% |
| 5035807 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 51.0 | 5.14e-01 | 98.7% | 94.8% |
| 3804919 | 207.1.1.37 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID | 0.56 | 42.0 | 3.76e-01 | 100.0% | 53.3% |
| 3516879 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.56 | 48.0 | 4.17e-01 | 100.0% | 60.9% |
| 3802001 | 207.1.1.174 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 | 0.56 | 41.0 | 2.85e-01 | 99.3% | 22.5% |
| 3874637 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.55 | 50.0 | 4.55e-01 | 100.0% | 76.6% |
| 4954556 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 50.0 | 4.66e-01 | 99.3% | 97.3% |
| 3390097 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 40.0 | 3.95e-01 | 74.8% | 93.8% |
| 3241382 | 10.40.1.1 ↗ | beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR | 0.54 | 50.0 | 4.85e-01 | 99.3% | 96.4% |
| 3766325 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 49.0 | 4.45e-01 | 100.0% | 74.8% |
| 1176686 | 10.32.1.77 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B | 0.54 | 47.0 | 4.78e-01 | 97.4% | 96.6% |
| 5061835 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 50.0 | 4.95e-01 | 100.0% | 98.7% |
| 1140 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.53 | 46.0 | 4.80e-01 | 97.4% | 100.0% |
| 3307728 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.53 | 44.0 | 4.35e-01 | 98.0% | 84.4% |
| 3225806 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 4.37e-01 | 82.8% | 100.0% |
| 3327146 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 42.0 | 2.95e-01 | 99.3% | 25.5% |
| 5078745 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 4.23e-01 | 96.7% | 98.3% |
| 3741536 | 10.32.1.173 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Muskelin_N | 0.51 | 47.0 | 4.62e-01 | 100.0% | 95.8% |
| 5039884 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 46.0 | 4.52e-01 | 100.0% | 95.8% |
| 3801529 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 46.0 | 4.44e-01 | 100.0% | 96.6% |
| 3691709 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 46.0 | 4.35e-01 | 100.0% | 89.1% |
| 3275066 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 40.0 | 4.25e-01 | 82.8% | 99.2% |
D2
medium
residues 107-148
D3
medium
residues 167-209_228-287
D4
medium
residues 614-652_665-680
D5
medium
residues 845-1013
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03689.22 best | Nepo_coat_N | 94.4 | 4.60e-27 | 53.8% | 100.0% |
CATH (81)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y26A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.90 | 86.0 | 6.57e-01 | 99.4% | 48.8% |
| 1a6cA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.90 | 87.0 | 6.57e-01 | 100.0% | 49.1% |
| 1pgw200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 74.0 | 5.70e-01 | 100.0% | 46.2% |
| 3napC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 71.0 | 5.96e-01 | 96.4% | 72.1% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 68.0 | 6.23e-01 | 96.4% | 72.4% |
| 5aooC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 71.0 | 6.42e-01 | 96.4% | 75.0% |
| 3napB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 70.0 | 6.09e-01 | 96.4% | 65.6% |
| 4qpiC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 70.0 | 6.13e-01 | 96.4% | 72.8% |
| 5mqcB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 69.0 | 6.19e-01 | 96.4% | 69.7% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 70.0 | 6.12e-01 | 96.4% | 74.4% |
| 5j98B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 69.0 | 5.94e-01 | 96.4% | 72.7% |
| 1b35C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 69.0 | 5.76e-01 | 96.4% | 66.3% |
| 5k0uB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 69.0 | 6.13e-01 | 96.4% | 73.6% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 69.0 | 5.91e-01 | 96.4% | 64.3% |
| 4rft000 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 64.0 | 6.56e-01 | 96.4% | 92.6% |
| 2ws9300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 69.0 | 6.18e-01 | 96.4% | 74.8% |
| 2ws9201 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 68.0 | 6.46e-01 | 96.4% | 86.2% |
| 7dodB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 66.0 | 6.27e-01 | 96.4% | 80.8% |
| 5mqcC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 68.0 | 5.83e-01 | 96.4% | 71.5% |
| 1tme300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 68.0 | 6.09e-01 | 96.4% | 74.3% |
| 5ewnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 68.0 | 6.59e-01 | 96.4% | 94.6% |
| 1tme200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 67.0 | 5.82e-01 | 96.4% | 93.7% |
| 5yl1A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 67.0 | 6.62e-01 | 96.4% | 96.7% |
| 3jb4C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 68.0 | 5.93e-01 | 96.4% | 68.0% |
| 5aca300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 67.0 | 6.09e-01 | 96.4% | 74.8% |
| 6jhsA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 68.0 | 5.78e-01 | 97.0% | 64.6% |
| 4nwvA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 64.0 | 6.26e-01 | 96.4% | 85.9% |
| 1e57B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 60.0 | 5.86e-01 | 94.7% | 79.8% |
| 1auyB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 60.0 | 5.78e-01 | 94.7% | 77.2% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 64.0 | 6.48e-01 | 96.4% | 95.2% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 44.0 | 5.19e-01 | 94.1% | 87.2% |
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.72 | 44.0 | 5.18e-01 | 91.7% | 88.0% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 64.0 | 5.44e-01 | 96.4% | 65.4% |
| 1smvC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 63.0 | 5.76e-01 | 95.9% | 87.4% |
| 4rs5A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 63.0 | 5.78e-01 | 96.4% | 78.3% |
| 1f2nC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 63.0 | 5.86e-01 | 96.4% | 81.1% |
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 62.0 | 5.70e-01 | 96.4% | 81.2% |
| 6eiwA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 62.0 | 5.97e-01 | 97.0% | 96.9% |
| 6aj3B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 61.0 | 6.23e-01 | 95.3% | 100.0% |
| 4fy1100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 61.0 | 5.64e-01 | 96.4% | 79.7% |
| 3jb8A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 60.0 | 5.87e-01 | 96.4% | 91.9% |
| 3jciA00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.67 | 60.0 | 5.76e-01 | 95.9% | 92.6% |
| 5j09A00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.66 | 58.0 | 5.87e-01 | 95.9% | 97.7% |
| 4aw7A03 | 2.60.120.1200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 45.0 | 5.19e-01 | 95.3% | 96.7% |
| 2vm9A02 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 38.0 | 4.69e-01 | 96.4% | 95.9% |
| 2fd8A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.64 | 39.0 | 3.76e-01 | 92.3% | 50.8% |
| 3napA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 57.0 | 4.90e-01 | 96.4% | 65.9% |
| 1w0nA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 45.0 | 5.22e-01 | 91.7% | 100.0% |
| 4zelB01 | 2.60.120.310 | Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain | 0.63 | 51.0 | 5.42e-01 | 98.8% | 100.0% |
| 4i0wD02 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 44.0 | 4.95e-01 | 91.7% | 93.8% |
| 1wckA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 47.0 | 5.18e-01 | 94.7% | 98.5% |
| 1pk6C00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 45.0 | 5.02e-01 | 94.7% | 98.4% |
| 1tg7A04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 53.0 | 5.31e-01 | 98.2% | 91.2% |
| 4nehA04 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.60 | 44.0 | 4.65e-01 | 94.1% | 83.1% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 38.0 | 4.49e-01 | 94.1% | 94.6% |
| 1cx1A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 50.0 | 5.23e-01 | 94.1% | 96.7% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 47.0 | 5.07e-01 | 92.9% | 98.6% |
| 5z06A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.58 | 50.0 | 4.98e-01 | 92.3% | 100.0% |
| 1uwwB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 50.0 | 4.96e-01 | 93.5% | 93.3% |
| 3kt4A02 | 3.60.130.20 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain | 0.57 | 42.0 | 3.42e-01 | 95.9% | 40.5% |
| 4b96A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.57 | 45.0 | 4.72e-01 | 92.9% | 92.7% |
| 6sl4A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.57 | 46.0 | 4.81e-01 | 93.5% | 95.3% |
| 4mtmA01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 31.0 | 3.87e-01 | 92.9% | 89.6% |
| 4lplA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 45.0 | 4.83e-01 | 92.3% | 99.3% |
| 3gf6A00 | 2.60.120.750 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF3845 | 0.56 | 51.0 | 4.64e-01 | 97.6% | 84.5% |
| 1k3iA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 46.0 | 4.78e-01 | 97.6% | 95.5% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 49.0 | 5.03e-01 | 93.5% | 98.2% |
| 2c9aA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 49.0 | 5.01e-01 | 94.7% | 98.1% |
| 2zxqA05 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 51.0 | 4.86e-01 | 99.4% | 97.0% |
| 1k12A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 4.80e-01 | 94.7% | 94.9% |
| 1kxgA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 4.78e-01 | 93.5% | 99.3% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 46.0 | 4.76e-01 | 94.7% | 97.4% |
| 2lfeA00 | 2.60.40.2840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 34.0 | 4.12e-01 | 92.3% | 99.1% |
| 2vmhA00 | 2.60.120.1060 | Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain | 0.53 | 43.0 | 4.64e-01 | 92.9% | 98.6% |
| 2bw8A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.53 | 45.0 | 4.16e-01 | 92.9% | 92.9% |
| 3myxB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 27.0 | 3.07e-01 | 91.1% | 61.5% |
| 3ammA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.52 | 45.0 | 3.98e-01 | 95.9% | 94.9% |
| 4kq7A02 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.51 | 45.0 | 4.18e-01 | 97.0% | 76.3% |
| 3gbwA00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.51 | 44.0 | 4.57e-01 | 94.7% | 98.1% |
| 4ozxA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.76e-01 | 95.9% | 97.9% |
| 1o59A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 45.0 | 4.44e-01 | 96.4% | 93.2% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 143448 | 10.2.1.38 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_N | 0.91 | 85.0 | 8.69e-01 | 98.2% | 100.0% |
| 1214 | 10.2.1.38 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_N | 0.90 | 86.0 | 8.50e-01 | 98.8% | 96.0% |
| 2330242 | 10.2.1.24 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_LCP | 0.82 | 75.0 | 7.28e-01 | 100.0% | 89.1% |
| 2726763 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.78 | 71.0 | 5.91e-01 | 96.4% | 72.5% |
| 1933849 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.78 | 71.0 | 6.40e-01 | 96.4% | 74.0% |
| 1400716 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.78 | 68.0 | 6.23e-01 | 96.4% | 72.4% |
| 140027 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.78 | 70.0 | 6.09e-01 | 96.4% | 65.6% |
| 1405130 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.77 | 70.0 | 6.12e-01 | 96.4% | 72.8% |
| 1949032 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.77 | 69.0 | 6.19e-01 | 96.4% | 69.7% |
| 2983138 | 10.2.1.88 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat | 0.77 | 70.0 | 6.15e-01 | 96.4% | 73.9% |
| 2044957 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.76 | 69.0 | 6.01e-01 | 96.4% | 71.2% |
| 2982483 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.76 | 70.0 | 6.14e-01 | 96.4% | 74.3% |
| 2579094 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.76 | 70.0 | 5.93e-01 | 96.4% | 71.3% |
| 1867996 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.76 | 68.0 | 5.79e-01 | 96.4% | 60.8% |
| 2793614 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.76 | 66.0 | 6.08e-01 | 96.4% | 72.9% |
| 1211 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.76 | 69.0 | 5.91e-01 | 96.4% | 64.3% |
| 3547487 | 10.32.1.185 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_IV | 0.76 | 46.0 | 5.44e-01 | 93.5% | 85.8% |
| 139106 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.75 | 68.0 | 6.16e-01 | 96.4% | 75.2% |
| 1264422 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.75 | 68.0 | 6.18e-01 | 96.4% | 93.6% |
| 4872939 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.75 | 67.0 | 6.18e-01 | 96.4% | 76.1% |
| 5041351 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.75 | 47.0 | 5.52e-01 | 93.5% | 88.3% |
| 3849254 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.75 | 49.0 | 5.91e-01 | 91.1% | 100.0% |
| 2100469 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.75 | 67.0 | 5.81e-01 | 96.4% | 89.1% |
| 1841617 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.74 | 67.0 | 5.84e-01 | 96.4% | 71.4% |
| 1687952 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.74 | 67.0 | 6.09e-01 | 96.4% | 74.8% |
| 2414126 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.74 | 67.0 | 5.91e-01 | 96.4% | 69.3% |
| 296002 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.73 | 60.0 | 5.83e-01 | 94.7% | 77.2% |
| 1693522 | 10.2.1.49 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid-VNN | 0.73 | 64.0 | 6.24e-01 | 96.4% | 85.4% |
| 2966259 | 10.2.1.55 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL | 0.73 | 42.0 | 5.28e-01 | 95.3% | 93.2% |
| 2579093 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.73 | 66.0 | 5.87e-01 | 96.4% | 71.4% |
| 1724852 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.73 | 64.0 | 6.47e-01 | 96.4% | 94.6% |
| 2862065 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.72 | 60.0 | 5.98e-01 | 94.7% | 84.6% |
| 1043486 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.72 | 65.0 | 5.35e-01 | 96.4% | 64.9% |
| 5084049 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.71 | 47.0 | 5.41e-01 | 94.7% | 90.4% |
| 1234 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.70 | 63.0 | 6.06e-01 | 96.4% | 92.2% |
| 4934819 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.70 | 50.0 | 5.78e-01 | 93.5% | 100.0% |
| 3596404 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.69 | 45.0 | 5.34e-01 | 88.8% | 100.0% |
| 5047105 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.67 | 53.0 | 5.74e-01 | 93.5% | 98.6% |
| 4955347 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.67 | 42.0 | 5.18e-01 | 82.2% | 100.0% |
| 3596983 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 46.0 | 5.29e-01 | 94.7% | 99.2% |
| 1731072 | 10.32.1.63 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5620 | 0.66 | 50.0 | 5.55e-01 | 94.7% | 100.0% |
| 3529380 | 11.1.1.550 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 | 0.66 | 39.0 | 4.62e-01 | 95.3% | 84.3% |
| 5035593 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.64 | 40.0 | 4.90e-01 | 88.8% | 100.0% |
| 4028986 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 40.0 | 4.92e-01 | 83.4% | 100.0% |
| 1863 | 11.1.5.19 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adhesin_Dr | 0.62 | 49.0 | 5.33e-01 | 94.1% | 97.9% |
| 3486154 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.62 | 44.0 | 4.81e-01 | 94.7% | 88.6% |
| 4281343 | 10.9.1.0 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin | 0.61 | 53.0 | 5.51e-01 | 93.5% | 100.0% |
| 4942547 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 54.0 | 5.20e-01 | 95.9% | 83.7% |
| 1887972 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.60 | 39.0 | 4.48e-01 | 94.7% | 90.8% |
| 3611768 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 39.0 | 4.43e-01 | 94.1% | 88.0% |
| 1714453 | 11.21.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like | 0.59 | 34.0 | 4.35e-01 | 95.9% | 100.0% |
| 3756345 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.59 | 50.0 | 5.13e-01 | 95.9% | 95.0% |
| 3594020 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 50.0 | 4.71e-01 | 91.7% | 100.0% |
| 4936904 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.58 | 33.0 | 4.09e-01 | 94.1% | 94.7% |
| 3390403 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.57 | 42.0 | 4.34e-01 | 94.7% | 80.0% |
| 4270868 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.57 | 47.0 | 4.36e-01 | 95.9% | 70.0% |
| 5060540 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 4.67e-01 | 93.5% | 91.3% |
| 3993514 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.56 | 51.0 | 5.20e-01 | 100.0% | 100.0% |
| 5083402 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 50.0 | 4.91e-01 | 96.4% | 97.3% |
| 4567165 | 10.32.1.208 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cleaved_Adhesin | 0.56 | 49.0 | 4.83e-01 | 92.9% | 100.0% |
| 3942542 | 10.32.1.32 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Bac_rhamnosid_N | 0.56 | 47.0 | 4.41e-01 | 90.5% | 81.5% |
| 3733710 | 10.12.1.107 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 | 0.55 | 48.0 | 4.17e-01 | 94.7% | 66.5% |
| 2841943 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 42.0 | 4.60e-01 | 92.9% | 95.1% |
| 3895220 | 10.32.1.69 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B | 0.55 | 49.0 | 4.47e-01 | 95.3% | 73.6% |
| 3941285 | 10.32.1.69 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B | 0.55 | 49.0 | 4.47e-01 | 95.3% | 76.8% |
| 3725915 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.55 | 40.0 | 3.39e-01 | 92.9% | 44.6% |
| 4319705 | 10.32.1.196 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WLS_GOLD | 0.54 | 47.0 | 4.56e-01 | 95.9% | 100.0% |
| 3626906 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.54 | 47.0 | 4.85e-01 | 94.1% | 98.1% |
| 3223531 | 10.32.1.69 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B | 0.54 | 48.0 | 4.35e-01 | 94.7% | 75.0% |
| 3168670 | 4081.1.1.7 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I | 0.53 | 42.0 | 3.97e-01 | 91.7% | 67.6% |
| 1546392 | 10.2.1.66 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV-like_capsid | 0.53 | 47.0 | 4.68e-01 | 95.9% | 90.9% |
| 3506316 | 10.32.1.28 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC | 0.52 | 47.0 | 4.67e-01 | 97.6% | 97.7% |
| 4405629 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 4.09e-01 | 91.1% | 100.0% |
| 5040023 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 4.19e-01 | 82.8% | 96.9% |
| 3242831 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 46.0 | 4.60e-01 | 94.7% | 98.2% |
| 3832080 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 45.0 | 3.11e-01 | 95.3% | 29.8% |
| 3619257 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.99e-01 | 87.6% | 100.0% |
| 3060390 | 10.2.1.48 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF2961 | 0.51 | 45.0 | 4.19e-01 | 97.0% | 75.9% |
| 3711130 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 43.0 | 4.17e-01 | 91.7% | 81.6% |
| 3580955 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 35.0 | 3.75e-01 | 88.8% | 80.0% |
D6
medium
residues 1014-1187_1339-1351
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03391.22 best | Nepo_coat | 180.7 | 2.30e-53 | 87.2% | 98.2% |