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polyprotein_P2a-P2b

Euk-Vir

Cymbidium_chlorotic_mosaic_virus

polyprotein_P2a-P2b__YP_009140472__Cymbidium_chlorotic_mosaic_virus__1602124

Identity

Accession:: YP_009140472 ↗
Protein ID:: polyprotein_P2a-P2b
Kingdom:: euk

Quality

78.6 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-63

PDB

D2 medium residues 76-128

PDB

D3 medium residues 129-228

PDB

Domain cluster: rep: hypothetical_protein__YP_009825042__Birds-foot_trefoil_enamovirus_1__2283314__D329-413

D4 medium residues 229-362

PDB

Domain cluster: rep: Mad1_20_16_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00920__D108-255

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zyoA01	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.90	59.0	6.78e-01	90.3%	88.1%
1mbmA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.87	45.0	6.12e-01	92.5%	94.4%
2w5eA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.80	44.0	5.89e-01	83.6%	100.0%
1wczA01	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.77	53.0	5.70e-01	89.6%	81.7%
4ri0A01	2.40.10.120	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.74	50.0	4.34e-01	89.6%	46.5%
1lvbA01	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.72	50.0	5.51e-01	94.0%	87.0%
2ijd101	2.40.10.120	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.69	48.0	4.32e-01	89.6%	52.8%
3k6yA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.68	52.0	5.77e-01	88.8%	98.1%
2d4rA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.51	30.0	2.92e-01	91.8%	52.1%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2472950	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.89	52.0	4.55e-01	89.6%	42.7%
2710030	1.1.5.12 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S39	0.88	59.0	5.08e-01	90.3%	47.6%
3280223	1.1.17.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2	0.81	53.0	4.62e-01	90.3%	46.2%
4974463	1.1.17.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2	0.79	50.0	4.69e-01	88.8%	52.8%
5023947	1.1.17.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2	0.75	49.0	4.53e-01	90.3%	52.9%
3452728	1.1.17.3 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2	0.70	53.0	4.53e-01	90.3%	51.2%
4028467	1.1.5.33 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2	0.70	55.0	4.21e-01	91.0%	39.6%
3464880	1.1.5.33 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2	0.69	53.0	4.48e-01	90.3%	49.8%
3403377	1.1.17.1 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin	0.62	52.0	4.17e-01	88.8%	50.0%

D5 medium residues 421-451_477-500_592-633_736-765

PDB

Domain cluster: rep: replicase_polyprotein__YP_009465710__Pepper_enamovirus__2073163__D698-776_892-917

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	31.6	1.30e-07	36.2%	10.5%
PF02123.22	RdRP_4	36.5	4.20e-09	26.8%	7.1%

D6 medium residues 452-476_824-878

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4mndA02	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.52	41.0	3.19e-01	87.5%	70.7%
4o6mA02	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.52	40.0	3.13e-01	87.5%	72.8%
1ic8A02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.51	31.0	3.19e-01	73.8%	63.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3165097	7011.1.1.1 ↗	alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE	0.61	44.0	2.83e-01	76.2%	30.6%
3686644	1075.1.1.9 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › DUF3533	0.55	42.0	3.30e-01	83.7%	46.9%
4607838	7011.1.1.1 ↗	alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE	0.52	40.0	2.68e-01	85.0%	43.1%
4081917	7011.1.1.1 ↗	alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE	0.51	43.0	2.87e-01	95.0%	78.2%

D7 medium residues 501-591_634-661_699-735

PDB

Domain cluster: rep: uncovered_polypeptide_polyprotein_2ab__YP_006331061_401-955__Artemisia_virus_A__1133751__D126-239_263-289_323-351

D8 medium residues 662-698_766-823

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	41.4	1.30e-10	59.0%	12.9%

CATH (50)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gx5A03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.76	71.0	6.44e-01	100.0%	94.3%
2qv6B02	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.67	50.0	4.58e-01	77.9%	79.5%
1lfpA03	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.67	48.0	5.33e-01	78.9%	97.3%
2qv6A01	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.67	49.0	4.47e-01	77.9%	77.3%
1konA03	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.67	48.0	5.24e-01	84.2%	94.7%
1lxnA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.66	46.0	4.64e-01	73.7%	92.9%
4dezA01	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.65	48.0	4.82e-01	77.9%	82.8%
1mw7A03	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.65	47.0	5.20e-01	76.8%	100.0%
1vk8A00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.65	47.0	4.81e-01	76.8%	94.6%
3v8vA01	3.30.2130.30	Alpha Beta › 2-Layer Sandwich › VC0802-like ›	0.65	46.0	3.55e-01	74.7%	70.3%
3qfhA01	3.30.70.80	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9	0.65	43.0	4.95e-01	75.8%	98.5%
1nm2A01	3.30.70.250	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding	0.64	45.0	5.10e-01	73.7%	100.0%
1s48A04	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.64	58.0	5.56e-01	100.0%	90.1%
1lxjA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.64	46.0	4.49e-01	74.7%	88.3%
1gmuA01	3.30.70.790	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain	0.64	40.0	4.60e-01	75.8%	89.6%
1s7hA02	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.64	44.0	4.70e-01	71.6%	97.6%
3lduA01	3.30.2130.30	Alpha Beta › 2-Layer Sandwich › VC0802-like ›	0.63	46.0	3.72e-01	75.8%	83.9%
1ufwA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.63	46.0	4.65e-01	76.8%	87.4%
1darA05	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.63	43.0	4.53e-01	71.6%	86.2%
2hzmG01	3.30.310.180	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein ›	0.62	44.0	4.21e-01	74.7%	92.2%
1earA02	3.30.70.790	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain	0.62	40.0	4.50e-01	78.9%	89.9%
1vi7A02	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.62	44.0	4.97e-01	74.7%	100.0%
4erdA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.62	44.0	4.28e-01	74.7%	78.7%
2jx2A00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.62	45.0	4.64e-01	75.8%	93.1%
3cjsA00	3.30.70.1170	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3	0.62	38.0	4.54e-01	72.6%	100.0%
1azsA00	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.62	50.0	3.98e-01	87.4%	68.4%
2xhcA01	3.30.70.940	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain	0.62	44.0	4.44e-01	74.7%	85.3%
1rzmA01	3.30.70.1140	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1	0.62	42.0	4.55e-01	71.6%	91.3%
5oyhD00	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.62	48.0	3.89e-01	84.2%	71.4%
2iboA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.61	44.0	4.51e-01	74.7%	100.0%
4i0wA00	3.30.70.2980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.61	40.0	4.09e-01	74.7%	68.5%
1vbkA01	3.30.70.1510	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like	0.61	43.0	4.53e-01	73.7%	97.6%
3dfeA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.61	44.0	4.64e-01	75.8%	97.6%
3gv5B01	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.60	44.0	3.98e-01	77.9%	87.9%
1s7hA01	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.60	42.0	4.56e-01	74.7%	100.0%
5d4nC00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.59	42.0	4.24e-01	74.7%	90.8%
3tj8A02	3.30.70.790	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain	0.59	39.0	4.25e-01	78.9%	86.5%
1s5jA03	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.58	51.0	4.39e-01	100.0%	91.1%
3r5gA00	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.58	43.0	3.49e-01	80.0%	88.2%
4mz0B05	3.30.70.250	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding	0.58	39.0	4.38e-01	71.6%	98.5%
1vx4q01	3.30.70.1730	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain	0.58	47.0	4.30e-01	92.6%	93.2%
2f1fA02	3.30.70.1150	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2	0.56	38.0	4.11e-01	71.6%	96.2%
4oloB00	3.30.70.1710	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain	0.55	37.0	3.91e-01	70.5%	78.6%
6u9hF02	3.30.70.1150	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2	0.55	38.0	4.11e-01	71.6%	97.4%
6k2eA01	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	36.0	4.07e-01	70.5%	95.6%
1whvA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.54	37.0	3.68e-01	70.5%	73.0%
6vu9A02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.53	39.0	2.87e-01	78.9%	84.7%
3m4xA01	3.30.70.1170	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3	0.52	32.0	3.35e-01	73.7%	65.9%
2i8eA01	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	35.0	3.85e-01	71.6%	98.6%
2kdoA03	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	36.0	3.81e-01	74.7%	90.0%

ECOD (64)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5068609	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.72	48.0	5.61e-01	75.8%	100.0%
5070657	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.71	47.0	5.19e-01	75.8%	85.3%
4975073	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.69	49.0	5.58e-01	74.7%	100.0%
4048587	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.69	49.0	5.53e-01	74.7%	100.0%
4231349	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.68	48.0	5.40e-01	77.9%	98.6%
4955462	304.120.1.5 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st	0.68	45.0	5.30e-01	73.7%	100.0%
5045691	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.68	48.0	5.46e-01	74.7%	100.0%
3753374	304.120.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI	0.68	45.0	5.21e-01	75.8%	98.5%
4586587	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.68	41.0	4.95e-01	72.6%	96.7%
5040370	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.68	48.0	5.43e-01	73.7%	100.0%
4008923	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.68	48.0	5.47e-01	76.8%	100.0%
3976720	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.67	48.0	5.37e-01	81.1%	100.0%
5023503	304.110.1.0 ↗	a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like	0.67	47.0	5.28e-01	73.7%	97.1%
4296471	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.67	46.0	5.22e-01	73.7%	97.1%
4653000	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.67	47.0	5.32e-01	76.8%	100.0%
4279811	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.66	47.0	5.02e-01	77.9%	87.5%
4156338	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.66	48.0	5.26e-01	83.2%	96.0%
4215184	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.66	46.0	5.23e-01	75.8%	100.0%
4622891	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.66	47.0	5.19e-01	77.9%	94.7%
4295716	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.66	45.0	5.11e-01	76.8%	97.1%
4205064	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.65	46.0	5.19e-01	73.7%	100.0%
4060507	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.65	46.0	5.17e-01	78.9%	100.0%
4507546	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.65	46.0	5.16e-01	73.7%	100.0%
4153537	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.65	42.0	4.53e-01	83.2%	78.8%
5004917	304.28.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain	0.65	45.0	5.05e-01	71.6%	100.0%
4314745	304.117.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC	0.65	46.0	5.12e-01	75.8%	100.0%
4658950	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.64	47.0	5.15e-01	81.1%	97.3%
4109303	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.64	47.0	5.20e-01	81.1%	98.7%
4027759	304.120.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI	0.64	43.0	4.97e-01	75.8%	100.0%
4093818	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.64	47.0	5.12e-01	81.1%	97.3%
4493767	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.64	45.0	5.06e-01	77.9%	100.0%
5029667	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.64	45.0	5.11e-01	73.7%	100.0%
4678773	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.64	46.0	5.00e-01	83.2%	96.0%
5041568	304.120.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI	0.63	42.0	4.88e-01	70.5%	100.0%
4033416	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.63	44.0	4.94e-01	78.9%	100.0%
3786220	304.11.1.0 ↗	a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase	0.63	47.0	4.91e-01	91.6%	88.2%
4077183	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.63	44.0	4.93e-01	77.9%	100.0%
4508346	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.62	42.0	4.53e-01	78.9%	82.5%
5293	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.62	40.0	4.49e-01	78.9%	89.7%
4070496	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.62	46.0	5.02e-01	84.2%	98.7%
4310337	304.117.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC	0.62	44.0	4.96e-01	78.9%	100.0%
4042122	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.62	43.0	4.85e-01	73.7%	100.0%
4646361	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.61	43.0	4.79e-01	73.7%	100.0%
1837331	304.7.1.7 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › CspB_prodomain	0.61	40.0	4.09e-01	74.7%	68.5%
3386186	304.5.1.0 ↗	a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like	0.61	42.0	4.44e-01	71.6%	97.6%
4362064	304.117.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC	0.61	43.0	4.77e-01	73.7%	100.0%
4217450	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.61	40.0	4.49e-01	78.9%	91.4%
4101997	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.61	43.0	4.74e-01	74.7%	100.0%
4299576	304.8.1.7 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C	0.61	43.0	4.54e-01	73.7%	88.0%
3908746	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.61	43.0	4.61e-01	74.7%	97.5%
3936431	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.61	45.0	4.69e-01	77.9%	90.6%
4174001	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.60	39.0	4.54e-01	81.1%	96.9%
4576277	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.60	39.0	4.35e-01	78.9%	90.0%
3404332	304.7.1.1 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14	0.60	43.0	4.40e-01	75.8%	85.6%
432311	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.60	39.0	4.19e-01	78.9%	80.0%
3398302	304.9.1.58 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM_2	0.59	43.0	4.56e-01	77.9%	89.4%
3989870	304.24.1.2 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF1949	0.59	41.0	4.45e-01	73.7%	98.7%
3520061	304.9.1.43 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › NCBP3	0.58	43.0	3.92e-01	77.9%	72.8%
4091426	2004.1.1.5 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran	0.58	49.0	3.00e-01	91.6%	67.7%
4457666	304.22.1.1 ↗	a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C	0.58	38.0	4.06e-01	78.9%	80.0%
3938553	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.57	42.0	3.82e-01	77.9%	76.0%
3738415	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.57	42.0	4.35e-01	77.9%	89.4%
3620607	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.57	42.0	3.72e-01	77.9%	74.6%
3764430	304.9.1.43 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › NCBP3	0.56	41.0	3.60e-01	77.9%	58.7%