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polyprotein

Euk-Vir

Sagiyama_virus

polyprotein__BAA92847__Sagiyama_virus__59303

Identity

Accession:
BAA92847 ↗
Protein ID:
polyprotein
Kingdom:
euk

Quality

70.6 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Togaviridae› Alphavirus› Sagiyama_virus

TaxID: 59303

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 507-561
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00943.26 best Alpha_E2_glycop 74.6 9.70e-21 100.0% 13.4%
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n40P03 2.60.40.4310 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain B 0.96 91.0 9.13e-01 100.0% 100.0%
8dwoK02 2.60.40.4310 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain B 0.85 78.0 7.37e-01 100.0% 87.5%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 56.0 4.58e-01 100.0% 49.5%
1rh8A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.65 54.0 4.15e-01 100.0% 66.9%
1cidA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 52.0 4.84e-01 92.7% 80.3%
3wdhA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 52.0 4.61e-01 100.0% 61.9%
3e38A02 2.60.40.3090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 51.0 4.63e-01 94.5% 94.9%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 52.0 4.25e-01 100.0% 47.7%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.55e-01 96.4% 78.4%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 4.04e-01 100.0% 76.6%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 53.0 4.59e-01 100.0% 78.0%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 52.0 3.81e-01 100.0% 49.7%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 53.0 3.67e-01 100.0% 36.9%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 49.0 4.07e-01 100.0% 48.1%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 49.0 3.85e-01 100.0% 40.5%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.39e-01 100.0% 76.6%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.28e-01 100.0% 75.0%
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.39e-01 96.4% 81.0%
4aeeA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 3.80e-01 90.9% 68.4%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 51.0 4.42e-01 100.0% 63.3%
1g5gA03 2.60.40.1690 Mainly Beta › Sandwich › Immunoglobulin-like › Head and neck region of the ectodomain of NDV fusion glycoprotein 0.60 49.0 4.81e-01 92.7% 86.7%
4nplA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.60 50.0 3.48e-01 100.0% 45.5%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.38e-01 100.0% 80.9%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.35e-01 100.0% 80.6%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 3.19e-01 80.0% 75.0%
2olsA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 41.0 2.98e-01 78.2% 99.5%
1yhpA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.58 46.0 4.09e-01 96.4% 94.6%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.09e-01 100.0% 76.5%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.31e-01 96.4% 79.5%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.27e-01 100.0% 92.0%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.15e-01 100.0% 92.2%
3gm8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.94e-01 100.0% 57.3%
5hp5A01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.57 46.0 3.65e-01 94.5% 69.8%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.08e-01 100.0% 89.0%
1ifrA00 2.60.40.1260 Mainly Beta › Sandwich › Immunoglobulin-like › Lamin Tail domain 0.57 46.0 3.82e-01 98.2% 85.0%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.09e-01 100.0% 92.6%
4aefA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.03e-01 100.0% 83.2%
4cj0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.92e-01 98.2% 82.1%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.88e-01 100.0% 89.4%
2yyoA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.56 47.0 3.47e-01 100.0% 76.9%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.92e-01 100.0% 79.6%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.63e-01 100.0% 69.4%
5huoE01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.55 39.0 3.11e-01 81.8% 53.2%
4aeeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.98e-01 100.0% 83.5%
2wv3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.91e-01 100.0% 92.0%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.54 43.0 4.22e-01 100.0% 85.9%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.32e-01 100.0% 89.5%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.25e-01 96.4% 96.1%
3ocpB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.46e-01 100.0% 46.1%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.51 39.0 2.86e-01 85.5% 54.7%
5f1sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.55e-01 100.0% 84.3%
1jznA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 41.0 3.23e-01 100.0% 88.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185420 11.1.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E2_glycop 0.96 91.0 6.58e-01 100.0% 42.0%
1792326 11.1.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E2_glycop 0.94 89.0 6.45e-01 100.0% 43.2%
1834365 11.1.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E2_glycop 0.81 71.0 5.38e-01 100.0% 44.2%
5009956 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 60.0 5.15e-01 100.0% 81.1%
3904389 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 56.0 4.99e-01 92.7% 82.5%
1280305 10.12.1.59 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C_2 0.68 56.0 4.66e-01 100.0% 52.6%
2756984 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.64 51.0 4.69e-01 90.9% 68.0%
4078175 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 52.0 4.35e-01 90.9% 88.4%
3966002 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 54.0 4.95e-01 100.0% 72.0%
134243 11.1.1.273 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro2_C5 0.64 53.0 4.29e-01 96.4% 85.7%
3226838 10.32.1.21 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.63 52.0 3.82e-01 100.0% 91.4%
3457092 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.01e-01 94.5% 90.0%
1173338 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.63 53.0 3.89e-01 100.0% 65.0%
3530404 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 53.0 4.16e-01 100.0% 61.5%
3249483 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.64e-01 100.0% 80.0%
5024045 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 52.0 4.21e-01 100.0% 53.0%
3901599 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 52.0 4.30e-01 100.0% 76.2%
4962805 231.1.2.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ 0.61 50.0 3.50e-01 92.7% 80.5%
3542738 11.1.1.18 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.61 49.0 3.87e-01 96.4% 79.2%
3481765 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 51.0 4.06e-01 100.0% 68.8%
4883889 11.1.1.18 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.61 49.0 4.04e-01 96.4% 91.1%
3714935 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 49.0 3.76e-01 100.0% 91.6%
4596980 5093.1.1.0 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein 0.60 47.0 3.05e-01 92.7% 17.1%
4995368 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.60 43.0 3.32e-01 78.2% 35.6%
5018601 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.23e-01 100.0% 79.0%
3543786 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.28e-01 100.0% 84.2%
3214855 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.60 50.0 4.11e-01 100.0% 55.5%
3237142 5093.1.1.0 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein 0.60 48.0 3.01e-01 92.7% 16.0%
5029957 11.1.1.608 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.59 47.0 4.35e-01 92.7% 82.7%
4618815 73.1.1.16 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Dicty_REP 0.59 48.0 3.93e-01 98.2% 84.2%
3708356 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.59 50.0 4.45e-01 100.0% 72.9%
1760669 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.59 48.0 4.46e-01 94.5% 73.6%
3898917 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 3.74e-01 100.0% 69.3%
5023022 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.58 48.0 4.16e-01 100.0% 58.9%
2163015 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.58 48.0 4.48e-01 94.5% 76.8%
3549762 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.58 48.0 3.94e-01 100.0% 65.2%
3413863 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.17e-01 100.0% 82.2%
3212872 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 3.86e-01 100.0% 88.7%
4955337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.27e-01 100.0% 74.1%
3622469 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.10e-01 92.7% 80.0%
3675735 10.32.1.7 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N 0.56 47.0 3.36e-01 100.0% 42.7%
4405102 242.1.1.8 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3, Intein_splicing 0.56 45.0 2.89e-01 90.9% 26.0%
4871069 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.56 46.0 4.30e-01 92.7% 75.4%
4600736 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 44.0 3.73e-01 96.4% 57.1%
3751614 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 45.0 3.95e-01 100.0% 66.3%
3970316 11.1.1.18 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.55 43.0 3.37e-01 100.0% 63.9%
1318713 3894.1.1.2 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.55 34.0 2.65e-01 89.1% 27.0%
2469738 11.1.1.986 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig, Ig_3 0.54 44.0 4.02e-01 100.0% 80.5%
3475612 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 38.0 2.85e-01 81.8% 93.1%
5070959 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 40.0 3.59e-01 100.0% 68.4%
3436834 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 43.0 2.73e-01 94.5% 20.4%
3654725 6.1.1.25 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 0.50 38.0 2.98e-01 85.5% 42.3%
D2 high residues 600-674
PDB
Domain cluster: rep: E2_protein__NP_740659__Sleeping_disease_virus__78540__D289-352
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00943.26 best Alpha_E2_glycop 104.7 6.70e-30 100.0% 18.6%
D3 medium residues 121-260
PDB
Domain cluster: rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00944.26 best Peptidase_S3 283.0 8.70e-85 100.0% 88.7%
D4 medium residues 345-468
PDB
Domain cluster: rep: E2_protein__NP_819006__Semliki_Forest_virus__11033__D2-168
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00943.26 best Alpha_E2_glycop 172.8 1.40e-50 99.2% 30.5%
D5 medium residues 469-488_565-599
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00943.26 best Alpha_E2_glycop 44.2 1.70e-11 63.6% 8.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968188 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.53 38.0 2.75e-01 81.8% 24.3%
D6 medium residues 817-854_944-981_1084-1109
PDB
Domain cluster: rep: structural_polyprotein__YP_009058893__Middelburg_virus__11023__D819-862_948-985_1091-1106
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01589.22 best Alpha_E1_glycop 33.7 2.50e-08 40.2% 7.5%
PF01589.22 Alpha_E1_glycop 45.5 6.30e-12 39.2% 7.5%
PF01589.22 Alpha_E1_glycop 36.6 3.20e-09 26.5% 5.0%
D7 medium residues 855-902_918-943_982-1083
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01589.22 best Alpha_E1_glycop 210.6 5.70e-62 59.1% 20.2%
PF01589.22 Alpha_E1_glycop 106.6 1.90e-30 43.2% 17.7%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 21.0 2.80e-01 80.7% 58.2%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 28.0 3.44e-01 84.1% 87.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4840163 11.1.1.28 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E1_glycop 0.96 94.0 7.60e-01 100.0% 78.2%
406733 5090.1.1.3 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Alpha_E1_glycop 0.96 93.0 7.56e-01 100.0% 77.9%
3896079 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 17.0 2.50e-01 77.3% 60.0%
404644 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.51 28.0 3.46e-01 82.4% 86.1%
D8 medium residues 1110-1165
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01589.22 best Alpha_E1_glycop 74.2 1.30e-20 100.0% 10.7%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n40F03 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.95 90.0 7.15e-01 100.0% 56.0%
8deeJ01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.95 87.0 7.44e-01 98.2% 65.5%
8dwoJ01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.92 86.0 7.21e-01 100.0% 63.6%
5jp0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 57.0 4.48e-01 100.0% 56.5%
3e38A02 2.60.40.3090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 53.0 4.77e-01 100.0% 65.8%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 42.0 3.14e-01 98.2% 32.4%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 40.0 2.92e-01 91.1% 61.0%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 41.0 3.23e-01 98.2% 89.7%
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 39.0 3.73e-01 98.2% 75.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890448 11.1.1.28 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E1_glycop 0.94 89.0 6.85e-01 100.0% 50.5%
2740693 11.1.1.28 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_E1_glycop 0.91 85.0 6.80e-01 100.0% 55.4%
4987214 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.30e-01 100.0% 66.3%
4079904 11.1.5.132 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF11 0.60 50.0 4.54e-01 100.0% 96.2%
3580553 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 45.0 3.21e-01 100.0% 24.6%
3580610 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 3.51e-01 100.0% 48.9%
3258288 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.54 42.0 4.31e-01 94.6% 96.2%
3987995 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.02e-01 98.2% 74.3%
3204359 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.52 43.0 3.34e-01 100.0% 92.4%
3613972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.49e-01 100.0% 47.8%
1964 12.1.1.9 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF1923 0.50 39.0 3.79e-01 98.2% 79.7%