polyprotein

Euk-Vir

Tobacco_vein_clearing_virus

polyprotein__NP_569141__Tobacco_vein_clearing_virus__107324

Identity

76.5 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Solendovirus› Tobacco_vein_clearing_virus

TaxID: 107324

View cluster (17 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-122

PDB

Domain cluster: rep: NC_029048.2__YP_009221738.1__PHICD211_20135__00153__D2-127

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02160.20 best	Peptidase_A3	38.3	1.50e-09	98.4%	50.5%

D2 high residues 170-184_278-304_334-411

PDB

Domain cluster: rep: IMGVR_UViG_3300021288_000040-3300021288-Ga0214511_10009611__D472-499_578-609_637-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	64.9	1.30e-17	65.8%	42.5%

D3 high residues 194-275_308-328

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143

D4 high residues 417-490

PDB

Domain cluster: rep: polyprotein,_partial__YP_010085997__Schefflera_ringspot_virus__2169729__D61-133

D5 high residues 495-631

PDB

Domain cluster: rep: polyprotein__YP_002916057__Sweet_potato_badnavirus_B__647294__D493-623

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17917.8 best	RT_RNaseH	65.1	7.90e-18	81.8%	82.9%
PF17919.8	RT_RNaseH_2	54.0	2.10e-14	59.9%	79.0%